Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32590 and QEN71_RS32595 are separated by 8 nucleotides QEN71_RS32595 and QEN71_RS32600 are separated by 125 nucleotides QEN71_RS32600 and QEN71_RS32605 are separated by 145 nucleotides
QEN71_RS32590: QEN71_RS32590 - ABC transporter ATP-binding protein, at 648,037 to 649,134
_RS32590
QEN71_RS32595: QEN71_RS32595 - GntR family transcriptional regulator, at 649,143 to 649,838
_RS32595
QEN71_RS32600: QEN71_RS32600 - nuclear transport factor 2 family protein, at 649,964 to 650,443
_RS32600
QEN71_RS32605: QEN71_RS32605 - TIGR00366 family protein, at 650,589 to 651,911
_RS32605
Position (kb) 649
650 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 648.178 kb on + strand, within QEN71_RS32590 at 648.574 kb on - strand, within QEN71_RS32590 at 648.780 kb on + strand, within QEN71_RS32590 at 648.792 kb on + strand, within QEN71_RS32590 at 648.919 kb on - strand, within QEN71_RS32590 at 648.973 kb on + strand, within QEN71_RS32590 at 648.974 kb on - strand, within QEN71_RS32590 at 648.974 kb on - strand, within QEN71_RS32590 at 649.142 kb on + strand at 649.229 kb on - strand, within QEN71_RS32595 at 649.295 kb on - strand, within QEN71_RS32595 at 649.413 kb on + strand, within QEN71_RS32595 at 649.850 kb on - strand at 649.850 kb on - strand at 649.861 kb on + strand at 650.531 kb on - strand at 650.557 kb on + strand at 650.557 kb on + strand at 650.558 kb on - strand at 650.558 kb on - strand at 650.558 kb on - strand at 650.558 kb on - strand at 650.601 kb on - strand at 650.615 kb on + strand at 650.615 kb on + strand at 650.634 kb on + strand at 650.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 648,178 + QEN71_RS32590 0.13 +0.5 648,574 - QEN71_RS32590 0.49 +0.2 648,780 + QEN71_RS32590 0.68 -0.5 648,792 + QEN71_RS32590 0.69 -0.6 648,919 - QEN71_RS32590 0.80 -0.3 648,973 + QEN71_RS32590 0.85 -0.8 648,974 - QEN71_RS32590 0.85 -0.6 648,974 - QEN71_RS32590 0.85 +0.4 649,142 + +0.2 649,229 - QEN71_RS32595 0.12 -2.2 649,295 - QEN71_RS32595 0.22 -1.1 649,413 + QEN71_RS32595 0.39 +1.0 649,850 - +1.1 649,850 - -0.4 649,861 + +1.2 650,531 - +0.3 650,557 + +3.7 650,557 + +1.4 650,558 - -0.2 650,558 - -0.6 650,558 - -0.3 650,558 - -1.1 650,601 - +0.1 650,615 + -0.4 650,615 + -0.5 650,634 + -0.8 650,634 + -1.7
Or see this region's nucleotide sequence