Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31985 and QEN71_RS31990 are separated by 262 nucleotides QEN71_RS31990 and QEN71_RS31995 are separated by 37 nucleotides
QEN71_RS31985: QEN71_RS31985 - ABC transporter substrate-binding protein, at 527,518 to 528,528
_RS31985
QEN71_RS31990: QEN71_RS31990 - cupin domain-containing protein, at 528,791 to 529,135
_RS31990
QEN71_RS31995: QEN71_RS31995 - M14 family metallopeptidase, at 529,173 to 530,150
_RS31995
Position (kb) 528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2 at 527.953 kb on - strand, within QEN71_RS31985 at 528.173 kb on + strand, within QEN71_RS31985 at 528.173 kb on + strand, within QEN71_RS31985 at 528.174 kb on - strand, within QEN71_RS31985 at 528.174 kb on - strand, within QEN71_RS31985 at 528.183 kb on - strand, within QEN71_RS31985 at 528.447 kb on - strand at 528.677 kb on + strand at 528.732 kb on + strand at 528.732 kb on + strand at 528.732 kb on + strand at 528.732 kb on + strand at 528.733 kb on - strand at 528.733 kb on - strand at 528.738 kb on + strand at 528.739 kb on - strand at 528.804 kb on + strand at 528.869 kb on - strand, within QEN71_RS31990 at 528.969 kb on + strand, within QEN71_RS31990 at 529.022 kb on + strand, within QEN71_RS31990 at 529.156 kb on - strand at 529.156 kb on - strand at 529.156 kb on - strand at 529.174 kb on + strand at 529.175 kb on - strand at 529.351 kb on + strand, within QEN71_RS31995 at 529.351 kb on + strand, within QEN71_RS31995 at 529.352 kb on - strand, within QEN71_RS31995 at 529.352 kb on - strand, within QEN71_RS31995 at 529.352 kb on - strand, within QEN71_RS31995 at 529.597 kb on + strand, within QEN71_RS31995 at 529.761 kb on - strand, within QEN71_RS31995 at 530.063 kb on + strand at 530.063 kb on + strand at 530.063 kb on + strand at 530.064 kb on - strand at 530.064 kb on - strand at 530.071 kb on + strand at 530.071 kb on + strand at 530.072 kb on - strand at 530.072 kb on - strand at 530.072 kb on - strand at 530.072 kb on - strand at 530.104 kb on + strand at 530.104 kb on + strand at 530.104 kb on + strand at 530.105 kb on - strand at 530.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 527,953 - QEN71_RS31985 0.43 -0.2 528,173 + QEN71_RS31985 0.65 +1.0 528,173 + QEN71_RS31985 0.65 -1.1 528,174 - QEN71_RS31985 0.65 +0.2 528,174 - QEN71_RS31985 0.65 +1.2 528,183 - QEN71_RS31985 0.66 -0.3 528,447 - +1.0 528,677 + -0.1 528,732 + -0.5 528,732 + -1.5 528,732 + -1.0 528,732 + +1.9 528,733 - -0.8 528,733 - -1.5 528,738 + -0.1 528,739 - -1.5 528,804 + +0.0 528,869 - QEN71_RS31990 0.23 -0.1 528,969 + QEN71_RS31990 0.52 -0.1 529,022 + QEN71_RS31990 0.67 -0.1 529,156 - -0.8 529,156 - +0.4 529,156 - +0.2 529,174 + -0.6 529,175 - -0.5 529,351 + QEN71_RS31995 0.18 +0.6 529,351 + QEN71_RS31995 0.18 -0.1 529,352 - QEN71_RS31995 0.18 +1.0 529,352 - QEN71_RS31995 0.18 +1.0 529,352 - QEN71_RS31995 0.18 -1.1 529,597 + QEN71_RS31995 0.43 -0.6 529,761 - QEN71_RS31995 0.60 +1.3 530,063 + +0.7 530,063 + -0.1 530,063 + +1.2 530,064 - -0.7 530,064 - +0.9 530,071 + +1.1 530,071 + +1.0 530,072 - -1.7 530,072 - -1.8 530,072 - +1.0 530,072 - +0.6 530,104 + -0.1 530,104 + -1.5 530,104 + -0.2 530,105 - +1.0 530,105 - -0.5
Or see this region's nucleotide sequence