Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31910 and QEN71_RS31915 overlap by 4 nucleotides QEN71_RS31915 and QEN71_RS31920 overlap by 22 nucleotides QEN71_RS31920 and QEN71_RS31925 overlap by 4 nucleotides
QEN71_RS31910: QEN71_RS31910 - ABC transporter ATP-binding protein, at 511,500 to 513,329
_RS31910
QEN71_RS31915: QEN71_RS31915 - (2Fe-2S)-binding protein, at 513,326 to 513,646
_RS31915
QEN71_RS31920: QEN71_RS31920 - NAD(P)/FAD-dependent oxidoreductase, at 513,625 to 515,064
_RS31920
QEN71_RS31925: QEN71_RS31925 - FAD-binding oxidoreductase, at 515,061 to 516,224
_RS31925
Position (kb) 513
514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 512.670 kb on + strand, within QEN71_RS31910 at 512.929 kb on - strand, within QEN71_RS31910 at 512.929 kb on - strand, within QEN71_RS31910 at 512.992 kb on - strand, within QEN71_RS31910 at 512.992 kb on - strand, within QEN71_RS31910 at 513.054 kb on + strand, within QEN71_RS31910 at 513.624 kb on + strand at 513.625 kb on - strand at 513.769 kb on + strand, within QEN71_RS31920 at 513.814 kb on + strand, within QEN71_RS31920 at 513.883 kb on + strand, within QEN71_RS31920 at 513.936 kb on - strand, within QEN71_RS31920 at 514.129 kb on + strand, within QEN71_RS31920 at 514.130 kb on - strand, within QEN71_RS31920 at 514.130 kb on - strand, within QEN71_RS31920 at 514.544 kb on - strand, within QEN71_RS31920 at 514.544 kb on - strand, within QEN71_RS31920 at 514.683 kb on + strand, within QEN71_RS31920 at 514.684 kb on - strand, within QEN71_RS31920 at 514.763 kb on + strand, within QEN71_RS31920 at 514.763 kb on + strand, within QEN71_RS31920 at 514.763 kb on + strand, within QEN71_RS31920 at 514.764 kb on - strand, within QEN71_RS31920 at 514.764 kb on - strand, within QEN71_RS31920 at 514.764 kb on - strand, within QEN71_RS31920 at 514.764 kb on - strand, within QEN71_RS31920 at 514.764 kb on - strand, within QEN71_RS31920 at 515.556 kb on - strand, within QEN71_RS31925 at 515.556 kb on - strand, within QEN71_RS31925 at 515.578 kb on + strand, within QEN71_RS31925 at 515.578 kb on + strand, within QEN71_RS31925 at 515.634 kb on + strand, within QEN71_RS31925 at 515.635 kb on - strand, within QEN71_RS31925 at 515.758 kb on - strand, within QEN71_RS31925 at 515.784 kb on + strand, within QEN71_RS31925
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 512,670 + QEN71_RS31910 0.64 -0.4 512,929 - QEN71_RS31910 0.78 +1.1 512,929 - QEN71_RS31910 0.78 -0.3 512,992 - QEN71_RS31910 0.82 -1.2 512,992 - QEN71_RS31910 0.82 +0.3 513,054 + QEN71_RS31910 0.85 -0.9 513,624 + -0.7 513,625 - +0.2 513,769 + QEN71_RS31920 0.10 -3.5 513,814 + QEN71_RS31920 0.13 +1.4 513,883 + QEN71_RS31920 0.18 -0.7 513,936 - QEN71_RS31920 0.22 -1.3 514,129 + QEN71_RS31920 0.35 +0.7 514,130 - QEN71_RS31920 0.35 -1.5 514,130 - QEN71_RS31920 0.35 -0.1 514,544 - QEN71_RS31920 0.64 +0.2 514,544 - QEN71_RS31920 0.64 -0.5 514,683 + QEN71_RS31920 0.73 -0.3 514,684 - QEN71_RS31920 0.74 -0.7 514,763 + QEN71_RS31920 0.79 -1.1 514,763 + QEN71_RS31920 0.79 -0.4 514,763 + QEN71_RS31920 0.79 +0.1 514,764 - QEN71_RS31920 0.79 +0.2 514,764 - QEN71_RS31920 0.79 -1.2 514,764 - QEN71_RS31920 0.79 +0.5 514,764 - QEN71_RS31920 0.79 -0.4 514,764 - QEN71_RS31920 0.79 +1.1 515,556 - QEN71_RS31925 0.43 +1.0 515,556 - QEN71_RS31925 0.43 +1.5 515,578 + QEN71_RS31925 0.44 +0.8 515,578 + QEN71_RS31925 0.44 +1.1 515,634 + QEN71_RS31925 0.49 -1.9 515,635 - QEN71_RS31925 0.49 -1.0 515,758 - QEN71_RS31925 0.60 -0.7 515,784 + QEN71_RS31925 0.62 -0.1
Or see this region's nucleotide sequence