Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29385

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
6,523,138	-		QEN71_RS29380	0.10	-0.6
6,523,332	+		QEN71_RS29380	0.32	-0.1
6,523,332	+		QEN71_RS29380	0.32	-0.2
6,523,333	-		QEN71_RS29380	0.32	+0.8
6,523,333	-		QEN71_RS29380	0.32	+0.2
6,523,333	-		QEN71_RS29380	0.32	-0.9
6,523,410	+		QEN71_RS29380	0.41	-0.1
6,523,410	+		QEN71_RS29380	0.41	+0.1
6,523,551	+		QEN71_RS29380	0.57	-1.7
6,523,551	+		QEN71_RS29380	0.57	-1.5
6,523,552	-		QEN71_RS29380	0.57	+0.0
6,523,552	-		QEN71_RS29380	0.57	-1.8
6,523,552	-		QEN71_RS29380	0.57	+1.0
6,523,552	-		QEN71_RS29380	0.57	+1.1
6,523,552	-		QEN71_RS29380	0.57	+0.2
6,523,552	-		QEN71_RS29380	0.57	+0.5
6,523,552	-		QEN71_RS29380	0.57	-1.5
6,523,572	+		QEN71_RS29380	0.59	-1.1
6,523,632	+		QEN71_RS29380	0.66	+0.4
6,523,633	-		QEN71_RS29380	0.66	-1.6
6,523,633	-		QEN71_RS29380	0.66	+0.2
6,523,633	-		QEN71_RS29380	0.66	+1.5
6,523,650	+		QEN71_RS29380	0.68	+1.4
6,523,650	+		QEN71_RS29380	0.68	+0.2
6,523,651	-		QEN71_RS29380	0.68	-0.7
6,523,732	-		QEN71_RS29380	0.77	+2.9
6,523,814	-		QEN71_RS29380	0.86	+0.3
6,523,860	+				-0.4
6,523,861	-				-0.1
6,523,861	-				-1.1
6,523,861	-				-0.1
6,523,928	-				-0.8
6,524,031	+				+2.2
6,524,031	+				+0.0
6,524,031	+				-0.8
6,524,031	+				-0.4
6,524,031	+				-1.4
6,524,031	+				+3.6
6,524,032	-				+0.1
6,524,032	-				+0.1
6,524,032	-				-0.8
6,524,032	-				+0.3
6,524,032	-				-1.0
6,524,032	-				+0.6
6,524,035	+				-1.7
6,524,035	+				-1.6
6,524,035	+				-0.9
6,524,036	-				-0.1
6,524,036	-				-0.1
6,524,036	-				+0.3
6,524,043	-				-0.1
6,524,043	-				-0.2
6,524,073	+				+0.5
6,524,073	+				-0.6
6,524,074	-				-0.2
6,524,148	+				+1.6
6,524,148	+				+0.8
6,524,148	+				+1.1
6,524,148	+				-1.6
6,524,148	+				-0.7
6,524,149	-				+0.6
6,524,149	-				+1.4
6,524,149	-				+0.7
6,524,151	+				-0.7
6,524,151	+				-0.0
6,524,151	+				-0.0
6,524,152	-				-1.7
6,524,152	-				+1.6
6,524,152	-				+0.3
6,524,152	-				-0.4
6,524,152	-				-1.4
6,524,152	-				-1.5
6,524,152	-				-1.6
6,524,199	+		QEN71_RS29385	0.10	-1.1
6,524,199	+		QEN71_RS29385	0.10	+1.0
6,524,199	+		QEN71_RS29385	0.10	-0.1
6,524,199	+		QEN71_RS29385	0.10	-0.3
6,524,199	+		QEN71_RS29385	0.10	-0.2
6,524,199	+		QEN71_RS29385	0.10	-0.4
6,524,199	+		QEN71_RS29385	0.10	-0.8
6,524,200	-		QEN71_RS29385	0.11	+1.2
6,524,200	-		QEN71_RS29385	0.11	-0.6
6,524,200	-		QEN71_RS29385	0.11	-0.0
6,524,200	-		QEN71_RS29385	0.11	+0.2
6,524,200	-		QEN71_RS29385	0.11	+0.4
6,524,200	-		QEN71_RS29385	0.11	+1.1
6,524,200	-		QEN71_RS29385	0.11	-1.3
6,524,200	-		QEN71_RS29385	0.11	+0.2
6,524,200	-		QEN71_RS29385	0.11	-0.6
6,524,200	-		QEN71_RS29385	0.11	+1.2
6,524,235	+		QEN71_RS29385	0.13	-0.2
6,524,235	+		QEN71_RS29385	0.13	-0.1
6,524,235	+		QEN71_RS29385	0.13	+0.9
6,524,236	-		QEN71_RS29385	0.13	-0.2
6,524,236	-		QEN71_RS29385	0.13	-1.1
6,524,236	-		QEN71_RS29385	0.13	-0.9
6,524,236	-		QEN71_RS29385	0.13	+0.2
6,524,236	-		QEN71_RS29385	0.13	-0.1
6,524,247	+		QEN71_RS29385	0.14	-0.6
6,524,247	+		QEN71_RS29385	0.14	-1.0
6,524,247	+		QEN71_RS29385	0.14	-0.1
6,524,247	+		QEN71_RS29385	0.14	-1.5
6,524,247	+		QEN71_RS29385	0.14	+1.6
6,524,247	+		QEN71_RS29385	0.14	-0.3
6,524,248	-		QEN71_RS29385	0.14	+0.4
6,524,248	-		QEN71_RS29385	0.14	+0.1
6,524,331	+		QEN71_RS29385	0.21	-0.6
6,524,331	+		QEN71_RS29385	0.21	-1.3
6,524,332	-		QEN71_RS29385	0.21	+0.5
6,524,332	-		QEN71_RS29385	0.21	-0.4
6,524,332	-		QEN71_RS29385	0.21	+0.3
6,524,397	+		QEN71_RS29385	0.27	-0.4
6,524,397	+		QEN71_RS29385	0.27	+2.2
6,524,398	-		QEN71_RS29385	0.27	+0.5
6,524,398	-		QEN71_RS29385	0.27	-0.3
6,524,769	+		QEN71_RS29385	0.57	+0.9
6,524,769	+		QEN71_RS29385	0.57	-0.6
6,524,769	+		QEN71_RS29385	0.57	-1.0
6,524,769	+		QEN71_RS29385	0.57	-0.1
6,524,769	+		QEN71_RS29385	0.57	-1.0
6,524,769	+		QEN71_RS29385	0.57	+2.5
6,524,770	-		QEN71_RS29385	0.57	+1.2
6,524,770	-		QEN71_RS29385	0.57	-2.3
6,524,770	-		QEN71_RS29385	0.57	+1.6
6,524,770	-		QEN71_RS29385	0.57	-0.4
6,524,770	-		QEN71_RS29385	0.57	-0.2
6,524,770	-		QEN71_RS29385	0.57	+0.2
6,524,835	+		QEN71_RS29385	0.63	-3.4
6,524,836	-		QEN71_RS29385	0.63	+0.8
6,524,836	-		QEN71_RS29385	0.63	+0.6
6,524,836	-		QEN71_RS29385	0.63	-0.5
6,524,836	-		QEN71_RS29385	0.63	-1.5
6,524,841	+		QEN71_RS29385	0.63	-0.3
6,524,841	+		QEN71_RS29385	0.63	+0.7
6,524,842	-		QEN71_RS29385	0.63	-2.2
6,524,842	-		QEN71_RS29385	0.63	-1.4
6,524,853	+		QEN71_RS29385	0.64	-0.1
6,524,853	+		QEN71_RS29385	0.64	-1.5
6,524,854	-		QEN71_RS29385	0.64	-0.8
6,524,881	+		QEN71_RS29385	0.67	-1.9
6,524,907	+		QEN71_RS29385	0.69	-0.1
6,524,907	+		QEN71_RS29385	0.69	-0.5
6,524,907	+		QEN71_RS29385	0.69	-0.0
6,524,907	+		QEN71_RS29385	0.69	-0.4
6,524,907	+		QEN71_RS29385	0.69	-0.8
6,524,907	+		QEN71_RS29385	0.69	-1.0
6,524,907	+		QEN71_RS29385	0.69	+2.2
6,524,907	+		QEN71_RS29385	0.69	+0.2
6,524,908	-		QEN71_RS29385	0.69	+1.2
6,524,908	-		QEN71_RS29385	0.69	+0.6
6,524,908	-		QEN71_RS29385	0.69	-0.9
6,524,908	-		QEN71_RS29385	0.69	+0.2
6,524,908	-		QEN71_RS29385	0.69	-0.8
6,524,908	-		QEN71_RS29385	0.69	+0.5
6,524,908	-		QEN71_RS29385	0.69	+0.1
6,524,908	-		QEN71_RS29385	0.69	-0.2
6,525,029	-		QEN71_RS29385	0.79	-1.4
6,525,054	+		QEN71_RS29385	0.81	-0.4
6,525,054	+		QEN71_RS29385	0.81	+0.8
6,525,054	+		QEN71_RS29385	0.81	-0.1
6,525,054	+		QEN71_RS29385	0.81	-0.4
6,525,055	-		QEN71_RS29385	0.81	+0.2
6,525,150	+		QEN71_RS29385	0.89	-0.5
6,525,151	-		QEN71_RS29385	0.89	-1.6
6,525,287	+				-0.4
6,525,287	+				-0.0
6,525,287	+				+0.0
6,525,288	-				+0.2
6,525,350	+				+1.8
6,525,350	+				-2.0
6,525,351	-				-1.0
6,525,351	-				-0.1
6,525,418	+				+0.4
6,525,438	+		QEN71_RS29390	0.12	+0.1
6,525,438	+		QEN71_RS29390	0.12	+0.3
6,525,438	+		QEN71_RS29390	0.12	-1.6
6,525,438	+		QEN71_RS29390	0.12	+0.5
6,525,439	-		QEN71_RS29390	0.12	-2.0
6,525,439	-		QEN71_RS29390	0.12	+1.1
6,525,439	-		QEN71_RS29390	0.12	+0.0
6,525,439	-		QEN71_RS29390	0.12	+0.3
6,525,498	+		QEN71_RS29390	0.20	+0.5
6,525,699	+		QEN71_RS29390	0.47	+0.3
6,525,699	+		QEN71_RS29390	0.47	+0.3
6,525,700	-		QEN71_RS29390	0.47	+0.1
6,525,700	-		QEN71_RS29390	0.47	-0.3
6,525,700	-		QEN71_RS29390	0.47	-1.1
6,525,700	-		QEN71_RS29390	0.47	+0.8
6,526,140	+				+0.2
6,526,140	+				-0.2
6,526,140	+				-0.1
6,526,141	-				-1.3
6,526,141	-				+0.4
6,526,142	+				+1.4
6,526,142	+				-0.3
6,526,142	+				-1.0
6,526,142	+				-0.2
6,526,142	+				+1.6
6,526,142	+				+1.7
6,526,142	+				+0.1
6,526,143	-				+0.3
6,526,143	-				-0.1
6,526,143	-				-0.3
6,526,143	-				+0.2
6,526,143	-				+1.3
6,526,181	+		QEN71_RS29395	0.11	-0.7
6,526,182	-		QEN71_RS29395	0.11	+0.2
6,526,221	+		QEN71_RS29395	0.16	-0.4