Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27305

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
6,084,361	+		QEN71_RS27300	0.41	-1.3
6,084,361	+		QEN71_RS27300	0.41	+1.0
6,084,362	-		QEN71_RS27300	0.41	+0.0
6,084,442	+		QEN71_RS27300	0.47	+0.8
6,084,443	-		QEN71_RS27300	0.47	-0.2
6,084,536	+		QEN71_RS27300	0.54	+0.1
6,084,536	+		QEN71_RS27300	0.54	-0.9
6,084,536	+		QEN71_RS27300	0.54	+0.7
6,084,537	-		QEN71_RS27300	0.54	-0.1
6,084,537	-		QEN71_RS27300	0.54	+0.3
6,084,537	-		QEN71_RS27300	0.54	+2.0
6,084,537	-		QEN71_RS27300	0.54	-0.3
6,084,537	-		QEN71_RS27300	0.54	+0.4
6,084,537	-		QEN71_RS27300	0.54	-0.2
6,084,537	-		QEN71_RS27300	0.54	+1.2
6,084,557	+		QEN71_RS27300	0.56	-0.2
6,084,557	+		QEN71_RS27300	0.56	+0.6
6,084,557	+		QEN71_RS27300	0.56	-0.8
6,084,557	+		QEN71_RS27300	0.56	+0.1
6,084,557	+		QEN71_RS27300	0.56	+0.8
6,084,557	+		QEN71_RS27300	0.56	+0.8
6,084,558	-		QEN71_RS27300	0.56	+1.1
6,084,558	-		QEN71_RS27300	0.56	+0.9
6,084,558	-		QEN71_RS27300	0.56	+2.0
6,084,671	+		QEN71_RS27300	0.64	+0.4
6,084,671	+		QEN71_RS27300	0.64	+0.6
6,084,671	+		QEN71_RS27300	0.64	-0.6
6,084,671	+		QEN71_RS27300	0.64	-0.2
6,084,672	-		QEN71_RS27300	0.64	+0.3
6,084,672	-		QEN71_RS27300	0.64	-0.3
6,084,807	+		QEN71_RS27300	0.75	-0.6
6,084,807	+		QEN71_RS27300	0.75	+0.4
6,084,808	-		QEN71_RS27300	0.75	-0.2
6,084,808	-		QEN71_RS27300	0.75	-0.2
6,084,808	-		QEN71_RS27300	0.75	+0.7
6,084,808	-		QEN71_RS27300	0.75	+1.7
6,084,808	-		QEN71_RS27300	0.75	+0.7
6,084,924	+		QEN71_RS27300	0.84	+1.1
6,084,924	+		QEN71_RS27300	0.84	-0.4
6,084,924	+		QEN71_RS27300	0.84	+0.8
6,084,925	-		QEN71_RS27300	0.84	+0.8
6,085,042	+				+0.1
6,085,042	+				+0.8
6,085,171	+				-0.5
6,085,171	+				+0.4
6,085,171	+				-2.0
6,085,171	+				+0.7
6,085,171	+				-0.1
6,085,171	+				-1.2
6,085,172	-				+0.3
6,085,172	-				-0.6
6,085,206	+				+1.6
6,085,206	+				-0.8
6,085,206	+				+0.0
6,085,206	+				-0.3
6,085,206	+				-0.2
6,085,207	-				+0.6
6,085,207	-				+0.2
6,085,486	+		QEN71_RS27305	0.20	+0.2
6,085,486	+		QEN71_RS27305	0.20	-0.2
6,085,520	-		QEN71_RS27305	0.23	+0.8
6,085,589	+		QEN71_RS27305	0.28	-0.0
6,085,589	+		QEN71_RS27305	0.28	-0.1
6,085,590	-		QEN71_RS27305	0.29	-2.1
6,085,590	-		QEN71_RS27305	0.29	-0.7
6,085,787	+		QEN71_RS27305	0.44	+0.8
6,085,787	+		QEN71_RS27305	0.44	+0.3
6,085,788	-		QEN71_RS27305	0.44	+1.0
6,085,788	-		QEN71_RS27305	0.44	+0.6
6,085,788	-		QEN71_RS27305	0.44	-1.3
6,085,788	-		QEN71_RS27305	0.44	+0.9
6,085,788	-		QEN71_RS27305	0.44	-0.8
6,086,041	+		QEN71_RS27305	0.65	-0.6
6,086,041	+		QEN71_RS27305	0.65	+0.3
6,086,041	+		QEN71_RS27305	0.65	+1.2
6,086,041	+		QEN71_RS27305	0.65	+0.9
6,086,042	-		QEN71_RS27305	0.65	-1.2
6,086,042	-		QEN71_RS27305	0.65	+0.5
6,086,042	-		QEN71_RS27305	0.65	-0.6
6,086,096	+		QEN71_RS27305	0.69	-0.9
6,086,096	+		QEN71_RS27305	0.69	-0.6
6,086,096	+		QEN71_RS27305	0.69	+2.9
6,086,096	+		QEN71_RS27305	0.69	-0.2
6,086,096	+		QEN71_RS27305	0.69	-0.0
6,086,096	+		QEN71_RS27305	0.69	+1.3
6,086,096	+		QEN71_RS27305	0.69	+0.5
6,086,096	+		QEN71_RS27305	0.69	+1.4
6,086,096	+		QEN71_RS27305	0.69	-0.7
6,086,096	+		QEN71_RS27305	0.69	-0.2
6,086,096	+		QEN71_RS27305	0.69	+1.2
6,086,097	-		QEN71_RS27305	0.69	-1.3
6,086,097	-		QEN71_RS27305	0.69	-0.1
6,086,097	-		QEN71_RS27305	0.69	-1.2
6,086,097	-		QEN71_RS27305	0.69	-0.2
6,086,097	-		QEN71_RS27305	0.69	+0.5
6,086,097	-		QEN71_RS27305	0.69	-0.4
6,086,097	-		QEN71_RS27305	0.69	-0.1
6,086,097	-		QEN71_RS27305	0.69	-0.1
6,086,397	+				+0.7
6,086,397	+				+0.6
6,086,397	+				-0.1
6,086,397	+				+1.4
6,086,398	-				+0.6
6,086,574	+				-2.4
6,086,575	-				-0.3
6,086,614	+		QEN71_RS27310	0.11	+0.9
6,086,614	+		QEN71_RS27310	0.11	+0.8
6,086,615	-		QEN71_RS27310	0.11	-2.2
6,086,615	-		QEN71_RS27310	0.11	-0.8
6,086,615	-		QEN71_RS27310	0.11	+1.6
6,086,681	+		QEN71_RS27310	0.16	+0.7
6,086,681	+		QEN71_RS27310	0.16	-1.0
6,086,681	+		QEN71_RS27310	0.16	-0.7
6,086,681	+		QEN71_RS27310	0.16	+1.7
6,086,681	+		QEN71_RS27310	0.16	+0.3
6,086,681	+		QEN71_RS27310	0.16	+0.5
6,086,682	-		QEN71_RS27310	0.16	+0.6
6,086,682	-		QEN71_RS27310	0.16	-0.9
6,086,696	+		QEN71_RS27310	0.18	-0.0
6,086,881	+		QEN71_RS27310	0.33	-0.2
6,086,881	+		QEN71_RS27310	0.33	-0.6
6,086,881	+		QEN71_RS27310	0.33	+1.0
6,086,881	+		QEN71_RS27310	0.33	+0.9
6,086,881	+		QEN71_RS27310	0.33	+0.1
6,086,881	+		QEN71_RS27310	0.33	+0.1
6,086,882	-		QEN71_RS27310	0.33	+0.2
6,086,882	-		QEN71_RS27310	0.33	+0.1
6,086,882	-		QEN71_RS27310	0.33	+1.4
6,086,900	+		QEN71_RS27310	0.34	+0.7
6,086,900	+		QEN71_RS27310	0.34	+0.3
6,086,900	+		QEN71_RS27310	0.34	+0.2
6,086,900	+		QEN71_RS27310	0.34	-1.1
6,086,900	+		QEN71_RS27310	0.34	-1.3
6,086,900	+		QEN71_RS27310	0.34	+0.3
6,086,900	+		QEN71_RS27310	0.34	-1.5
6,086,900	+		QEN71_RS27310	0.34	+0.8
6,086,900	+		QEN71_RS27310	0.34	-0.2
6,086,901	-		QEN71_RS27310	0.34	-1.1
6,086,901	-		QEN71_RS27310	0.34	+0.2
6,086,901	-		QEN71_RS27310	0.34	+1.0
6,086,921	+		QEN71_RS27310	0.36	-0.6
6,086,984	+		QEN71_RS27310	0.41	+1.4
6,086,984	+		QEN71_RS27310	0.41	+0.1
6,086,985	-		QEN71_RS27310	0.41	+1.2
6,087,001	+		QEN71_RS27310	0.43	-2.1
6,087,001	+		QEN71_RS27310	0.43	+0.4
6,087,001	+		QEN71_RS27310	0.43	-0.2
6,087,001	+		QEN71_RS27310	0.43	+0.0
6,087,001	+		QEN71_RS27310	0.43	-0.1
6,087,001	+		QEN71_RS27310	0.43	-0.7
6,087,002	-		QEN71_RS27310	0.43	-0.5
6,087,036	+		QEN71_RS27310	0.45	-0.2
6,087,037	-		QEN71_RS27310	0.45	+0.3
6,087,037	-		QEN71_RS27310	0.45	-0.4
6,087,037	-		QEN71_RS27310	0.45	-0.2
6,087,037	-		QEN71_RS27310	0.45	-0.1
6,087,192	-		QEN71_RS27310	0.58	-0.1
6,087,192	-		QEN71_RS27310	0.58	+0.1
6,087,192	-		QEN71_RS27310	0.58	+0.1
6,087,192	-		QEN71_RS27310	0.58	-0.2
6,087,293	+		QEN71_RS27310	0.66	+0.0
6,087,293	+		QEN71_RS27310	0.66	+0.1
6,087,293	+		QEN71_RS27310	0.66	-0.2
6,087,294	-		QEN71_RS27310	0.67	-1.8
6,087,294	-		QEN71_RS27310	0.67	+2.1
6,087,294	-		QEN71_RS27310	0.67	+0.5