Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23460

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23455 and QEN71_RS23460 are separated by 108 nucleotidesQEN71_RS23460 and QEN71_RS23465 are separated by 6 nucleotides QEN71_RS23455: QEN71_RS23455 - AraC family transcriptional regulator, at 5,226,254 to 5,227,174 _RS23455 QEN71_RS23460: QEN71_RS23460 - hypothetical protein, at 5,227,283 to 5,227,831 _RS23460 QEN71_RS23465: QEN71_RS23465 - DHA2 family efflux MFS transporter permease subunit, at 5,227,838 to 5,229,229 _RS23465 Position (kb) 5227 5228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5226.361 kb on + strand, within QEN71_RS23455at 5226.416 kb on + strand, within QEN71_RS23455at 5226.450 kb on + strand, within QEN71_RS23455at 5226.450 kb on + strand, within QEN71_RS23455at 5226.450 kb on + strand, within QEN71_RS23455at 5226.450 kb on + strand, within QEN71_RS23455at 5226.450 kb on + strand, within QEN71_RS23455at 5226.450 kb on + strand, within QEN71_RS23455at 5226.451 kb on - strand, within QEN71_RS23455at 5226.451 kb on - strand, within QEN71_RS23455at 5226.451 kb on - strand, within QEN71_RS23455at 5226.451 kb on - strand, within QEN71_RS23455at 5226.541 kb on + strand, within QEN71_RS23455at 5226.769 kb on + strand, within QEN71_RS23455at 5226.770 kb on - strand, within QEN71_RS23455at 5226.770 kb on - strand, within QEN71_RS23455at 5226.770 kb on - strand, within QEN71_RS23455at 5226.770 kb on - strand, within QEN71_RS23455at 5226.770 kb on - strand, within QEN71_RS23455at 5226.834 kb on + strand, within QEN71_RS23455at 5226.835 kb on - strand, within QEN71_RS23455at 5226.835 kb on - strand, within QEN71_RS23455at 5226.835 kb on - strand, within QEN71_RS23455at 5226.835 kb on - strand, within QEN71_RS23455at 5226.835 kb on - strand, within QEN71_RS23455at 5226.846 kb on + strand, within QEN71_RS23455at 5226.846 kb on + strand, within QEN71_RS23455at 5226.846 kb on + strand, within QEN71_RS23455at 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.196 kb on + strandat 5227.197 kb on - strandat 5227.197 kb on - strandat 5227.197 kb on - strandat 5227.207 kb on + strandat 5227.208 kb on - strandat 5227.235 kb on + strandat 5227.235 kb on + strandat 5227.236 kb on - strandat 5227.236 kb on - strandat 5227.376 kb on + strand, within QEN71_RS23460at 5227.377 kb on - strand, within QEN71_RS23460at 5227.377 kb on - strand, within QEN71_RS23460at 5227.418 kb on + strand, within QEN71_RS23460at 5227.419 kb on - strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.559 kb on + strand, within QEN71_RS23460at 5227.560 kb on - strand, within QEN71_RS23460at 5227.560 kb on - strand, within QEN71_RS23460at 5227.560 kb on - strand, within QEN71_RS23460at 5227.560 kb on - strand, within QEN71_RS23460at 5227.560 kb on - strand, within QEN71_RS23460at 5227.560 kb on - strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.613 kb on + strand, within QEN71_RS23460at 5227.614 kb on - strand, within QEN71_RS23460at 5228.206 kb on - strand, within QEN71_RS23465at 5228.206 kb on - strand, within QEN71_RS23465at 5228.206 kb on - strand, within QEN71_RS23465at 5228.214 kb on + strand, within QEN71_RS23465at 5228.214 kb on + strand, within QEN71_RS23465at 5228.215 kb on - strand, within QEN71_RS23465at 5228.215 kb on - strand, within QEN71_RS23465at 5228.504 kb on - strand, within QEN71_RS23465at 5228.505 kb on + strand, within QEN71_RS23465at 5228.505 kb on + strand, within QEN71_RS23465at 5228.506 kb on - strand, within QEN71_RS23465at 5228.506 kb on - strand, within QEN71_RS23465at 5228.506 kb on - strand, within QEN71_RS23465at 5228.506 kb on - strand, within QEN71_RS23465at 5228.506 kb on - strand, within QEN71_RS23465at 5228.514 kb on + strand, within QEN71_RS23465at 5228.514 kb on + strand, within QEN71_RS23465at 5228.514 kb on + strand, within QEN71_RS23465at 5228.515 kb on - strand, within QEN71_RS23465

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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5,226,361 + QEN71_RS23455 0.12 +0.9
5,226,416 + QEN71_RS23455 0.18 +0.2
5,226,450 + QEN71_RS23455 0.21 +0.4
5,226,450 + QEN71_RS23455 0.21 +0.7
5,226,450 + QEN71_RS23455 0.21 -0.6
5,226,450 + QEN71_RS23455 0.21 -2.4
5,226,450 + QEN71_RS23455 0.21 +0.0
5,226,450 + QEN71_RS23455 0.21 +0.5
5,226,451 - QEN71_RS23455 0.21 -0.2
5,226,451 - QEN71_RS23455 0.21 -1.7
5,226,451 - QEN71_RS23455 0.21 -0.1
5,226,451 - QEN71_RS23455 0.21 -0.5
5,226,541 + QEN71_RS23455 0.31 +0.5
5,226,769 + QEN71_RS23455 0.56 +1.5
5,226,770 - QEN71_RS23455 0.56 +0.0
5,226,770 - QEN71_RS23455 0.56 -0.3
5,226,770 - QEN71_RS23455 0.56 +0.2
5,226,770 - QEN71_RS23455 0.56 -1.4
5,226,770 - QEN71_RS23455 0.56 -0.5
5,226,834 + QEN71_RS23455 0.63 -0.9
5,226,835 - QEN71_RS23455 0.63 -0.1
5,226,835 - QEN71_RS23455 0.63 +0.4
5,226,835 - QEN71_RS23455 0.63 -0.5
5,226,835 - QEN71_RS23455 0.63 +1.2
5,226,835 - QEN71_RS23455 0.63 -0.6
5,226,846 + QEN71_RS23455 0.64 -0.4
5,226,846 + QEN71_RS23455 0.64 -0.3
5,226,846 + QEN71_RS23455 0.64 -0.2
5,227,196 + -0.4
5,227,196 + +0.1
5,227,196 + -0.4
5,227,196 + -0.5
5,227,196 + -0.9
5,227,196 + -0.2
5,227,196 + +0.7
5,227,196 + -0.7
5,227,196 + -0.4
5,227,197 - +1.3
5,227,197 - -0.4
5,227,197 - +0.5
5,227,207 + +0.0
5,227,208 - -0.6
5,227,235 + -1.8
5,227,235 + -0.5
5,227,236 - -0.1
5,227,236 - -0.9
5,227,376 + QEN71_RS23460 0.17 +3.5
5,227,377 - QEN71_RS23460 0.17 -0.6
5,227,377 - QEN71_RS23460 0.17 +0.3
5,227,418 + QEN71_RS23460 0.25 -0.2
5,227,419 - QEN71_RS23460 0.25 +1.3
5,227,559 + QEN71_RS23460 0.50 +0.2
5,227,559 + QEN71_RS23460 0.50 +0.0
5,227,559 + QEN71_RS23460 0.50 +0.3
5,227,559 + QEN71_RS23460 0.50 +0.1
5,227,559 + QEN71_RS23460 0.50 -0.6
5,227,559 + QEN71_RS23460 0.50 +0.7
5,227,559 + QEN71_RS23460 0.50 +1.0
5,227,559 + QEN71_RS23460 0.50 -0.1
5,227,559 + QEN71_RS23460 0.50 +0.4
5,227,559 + QEN71_RS23460 0.50 -2.1
5,227,559 + QEN71_RS23460 0.50 +0.4
5,227,559 + QEN71_RS23460 0.50 +0.2
5,227,560 - QEN71_RS23460 0.50 -0.2
5,227,560 - QEN71_RS23460 0.50 +1.1
5,227,560 - QEN71_RS23460 0.50 -0.0
5,227,560 - QEN71_RS23460 0.50 -2.3
5,227,560 - QEN71_RS23460 0.50 +1.5
5,227,560 - QEN71_RS23460 0.50 +0.9
5,227,613 + QEN71_RS23460 0.60 -2.7
5,227,613 + QEN71_RS23460 0.60 -0.4
5,227,613 + QEN71_RS23460 0.60 -0.0
5,227,613 + QEN71_RS23460 0.60 -0.8
5,227,613 + QEN71_RS23460 0.60 -0.3
5,227,613 + QEN71_RS23460 0.60 -1.5
5,227,613 + QEN71_RS23460 0.60 -0.3
5,227,614 - QEN71_RS23460 0.60 -0.8
5,228,206 - QEN71_RS23465 0.26 -2.9
5,228,206 - QEN71_RS23465 0.26 -2.0
5,228,206 - QEN71_RS23465 0.26 -0.2
5,228,214 + QEN71_RS23465 0.27 +0.5
5,228,214 + QEN71_RS23465 0.27 -0.5
5,228,215 - QEN71_RS23465 0.27 -1.4
5,228,215 - QEN71_RS23465 0.27 -1.7
5,228,504 - QEN71_RS23465 0.48 -0.2
5,228,505 + QEN71_RS23465 0.48 -0.9
5,228,505 + QEN71_RS23465 0.48 -0.5
5,228,506 - QEN71_RS23465 0.48 +1.0
5,228,506 - QEN71_RS23465 0.48 +1.3
5,228,506 - QEN71_RS23465 0.48 -0.2
5,228,506 - QEN71_RS23465 0.48 -0.9
5,228,506 - QEN71_RS23465 0.48 +0.3
5,228,514 + QEN71_RS23465 0.49 -1.0
5,228,514 + QEN71_RS23465 0.49 -0.5
5,228,514 + QEN71_RS23465 0.49 +0.5
5,228,515 - QEN71_RS23465 0.49 +0.3

Or see this region's nucleotide sequence