Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22760 and QEN71_RS22765 are separated by 102 nucleotides QEN71_RS22765 and QEN71_RS22770 are separated by 10 nucleotides QEN71_RS22770 and QEN71_RS22775 are separated by 138 nucleotides
QEN71_RS22760: QEN71_RS22760 - arginyltransferase, at 5,041,833 to 5,042,672
_RS22760
QEN71_RS22765: QEN71_RS22765 - quinone-dependent dihydroorotate dehydrogenase, at 5,042,775 to 5,043,809
_RS22765
QEN71_RS22770: QEN71_RS22770 - signal peptidase I, at 5,043,820 to 5,044,521
_RS22770
QEN71_RS22775: QEN71_RS22775 - Gfo/Idh/MocA family oxidoreductase, at 5,044,660 to 5,045,664
_RS22775
Position (kb) 5042
5043
5044 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5041.884 kb on + strand at 5041.884 kb on + strand at 5041.899 kb on + strand at 5041.900 kb on - strand at 5041.911 kb on + strand at 5041.911 kb on + strand at 5041.911 kb on + strand at 5041.911 kb on + strand at 5041.978 kb on - strand, within QEN71_RS22760 at 5041.978 kb on - strand, within QEN71_RS22760 at 5041.978 kb on - strand, within QEN71_RS22760 at 5042.026 kb on - strand, within QEN71_RS22760 at 5042.026 kb on - strand, within QEN71_RS22760 at 5042.034 kb on + strand, within QEN71_RS22760 at 5042.035 kb on - strand, within QEN71_RS22760 at 5042.035 kb on - strand, within QEN71_RS22760 at 5042.160 kb on + strand, within QEN71_RS22760 at 5042.160 kb on + strand, within QEN71_RS22760 at 5042.175 kb on + strand, within QEN71_RS22760 at 5042.175 kb on + strand, within QEN71_RS22760 at 5042.175 kb on + strand, within QEN71_RS22760 at 5042.176 kb on - strand, within QEN71_RS22760 at 5042.176 kb on - strand, within QEN71_RS22760 at 5042.176 kb on - strand, within QEN71_RS22760 at 5042.184 kb on + strand, within QEN71_RS22760 at 5042.184 kb on + strand, within QEN71_RS22760 at 5042.184 kb on + strand, within QEN71_RS22760 at 5042.184 kb on + strand, within QEN71_RS22760 at 5042.184 kb on + strand, within QEN71_RS22760 at 5042.185 kb on - strand, within QEN71_RS22760 at 5042.185 kb on - strand, within QEN71_RS22760 at 5042.185 kb on - strand, within QEN71_RS22760 at 5042.185 kb on - strand, within QEN71_RS22760 at 5042.185 kb on - strand, within QEN71_RS22760 at 5042.185 kb on - strand, within QEN71_RS22760 at 5042.193 kb on + strand, within QEN71_RS22760 at 5042.193 kb on + strand, within QEN71_RS22760 at 5042.247 kb on + strand, within QEN71_RS22760 at 5042.319 kb on + strand, within QEN71_RS22760 at 5042.320 kb on - strand, within QEN71_RS22760 at 5042.400 kb on + strand, within QEN71_RS22760 at 5042.400 kb on + strand, within QEN71_RS22760 at 5042.400 kb on + strand, within QEN71_RS22760 at 5042.400 kb on + strand, within QEN71_RS22760 at 5042.400 kb on + strand, within QEN71_RS22760 at 5042.401 kb on - strand, within QEN71_RS22760 at 5042.401 kb on - strand, within QEN71_RS22760 at 5042.436 kb on + strand, within QEN71_RS22760 at 5042.437 kb on - strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.445 kb on + strand, within QEN71_RS22760 at 5042.446 kb on - strand, within QEN71_RS22760 at 5042.446 kb on - strand, within QEN71_RS22760 at 5042.446 kb on - strand, within QEN71_RS22760 at 5042.446 kb on - strand, within QEN71_RS22760 at 5042.446 kb on - strand, within QEN71_RS22760 at 5042.446 kb on - strand, within QEN71_RS22760 at 5042.500 kb on - strand, within QEN71_RS22760 at 5042.500 kb on - strand, within QEN71_RS22760 at 5042.500 kb on - strand, within QEN71_RS22760 at 5042.500 kb on - strand, within QEN71_RS22760 at 5042.500 kb on - strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.538 kb on + strand, within QEN71_RS22760 at 5042.539 kb on - strand, within QEN71_RS22760 at 5042.539 kb on - strand, within QEN71_RS22760 at 5042.539 kb on - strand, within QEN71_RS22760 at 5042.733 kb on - strand at 5043.247 kb on - strand, within QEN71_RS22765 at 5043.736 kb on - strand at 5043.807 kb on + strand at 5043.808 kb on - strand at 5043.808 kb on - strand at 5043.808 kb on - strand at 5043.808 kb on - strand at 5043.876 kb on - strand at 5043.876 kb on - strand at 5043.876 kb on - strand at 5043.878 kb on + strand at 5043.878 kb on + strand at 5043.878 kb on + strand at 5043.878 kb on + strand at 5043.878 kb on + strand at 5043.878 kb on + strand at 5043.878 kb on + strand at 5043.879 kb on - strand at 5043.879 kb on - strand at 5043.879 kb on - strand at 5043.879 kb on - strand at 5043.998 kb on + strand, within QEN71_RS22770 at 5043.998 kb on + strand, within QEN71_RS22770 at 5043.999 kb on - strand, within QEN71_RS22770 at 5044.116 kb on - strand, within QEN71_RS22770 at 5044.193 kb on + strand, within QEN71_RS22770 at 5044.193 kb on + strand, within QEN71_RS22770 at 5044.194 kb on - strand, within QEN71_RS22770 at 5044.194 kb on - strand, within QEN71_RS22770 at 5044.330 kb on - strand, within QEN71_RS22770 at 5044.355 kb on + strand, within QEN71_RS22770 at 5044.356 kb on - strand, within QEN71_RS22770 at 5044.356 kb on - strand, within QEN71_RS22770 at 5044.356 kb on - strand, within QEN71_RS22770 at 5044.490 kb on + strand at 5044.490 kb on + strand at 5044.491 kb on - strand at 5044.491 kb on - strand at 5044.561 kb on + strand at 5044.561 kb on + strand at 5044.561 kb on + strand at 5044.561 kb on + strand at 5044.562 kb on - strand at 5044.562 kb on - strand at 5044.562 kb on - strand at 5044.562 kb on - strand at 5044.633 kb on - strand at 5044.633 kb on - strand at 5044.799 kb on + strand, within QEN71_RS22775 at 5044.800 kb on - strand, within QEN71_RS22775 at 5044.800 kb on - strand, within QEN71_RS22775
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,041,884 + +1.0 5,041,884 + -2.5 5,041,899 + +2.6 5,041,900 - -0.8 5,041,911 + +0.4 5,041,911 + +0.7 5,041,911 + +0.5 5,041,911 + -1.1 5,041,978 - QEN71_RS22760 0.17 -0.1 5,041,978 - QEN71_RS22760 0.17 +0.4 5,041,978 - QEN71_RS22760 0.17 -0.2 5,042,026 - QEN71_RS22760 0.23 -2.3 5,042,026 - QEN71_RS22760 0.23 +0.7 5,042,034 + QEN71_RS22760 0.24 +0.5 5,042,035 - QEN71_RS22760 0.24 -1.3 5,042,035 - QEN71_RS22760 0.24 -0.4 5,042,160 + QEN71_RS22760 0.39 -0.8 5,042,160 + QEN71_RS22760 0.39 -2.5 5,042,175 + QEN71_RS22760 0.41 -0.7 5,042,175 + QEN71_RS22760 0.41 -1.0 5,042,175 + QEN71_RS22760 0.41 -1.0 5,042,176 - QEN71_RS22760 0.41 -0.7 5,042,176 - QEN71_RS22760 0.41 +0.1 5,042,176 - QEN71_RS22760 0.41 -0.7 5,042,184 + QEN71_RS22760 0.42 -1.7 5,042,184 + QEN71_RS22760 0.42 -2.5 5,042,184 + QEN71_RS22760 0.42 -0.6 5,042,184 + QEN71_RS22760 0.42 -0.4 5,042,184 + QEN71_RS22760 0.42 +0.5 5,042,185 - QEN71_RS22760 0.42 -0.1 5,042,185 - QEN71_RS22760 0.42 -1.3 5,042,185 - QEN71_RS22760 0.42 +1.4 5,042,185 - QEN71_RS22760 0.42 +1.6 5,042,185 - QEN71_RS22760 0.42 -1.2 5,042,185 - QEN71_RS22760 0.42 +0.4 5,042,193 + QEN71_RS22760 0.43 -0.9 5,042,193 + QEN71_RS22760 0.43 -1.1 5,042,247 + QEN71_RS22760 0.49 +1.4 5,042,319 + QEN71_RS22760 0.58 -2.6 5,042,320 - QEN71_RS22760 0.58 +1.3 5,042,400 + QEN71_RS22760 0.68 -0.8 5,042,400 + QEN71_RS22760 0.68 +1.6 5,042,400 + QEN71_RS22760 0.68 -0.8 5,042,400 + QEN71_RS22760 0.68 +1.5 5,042,400 + QEN71_RS22760 0.68 -0.7 5,042,401 - QEN71_RS22760 0.68 -0.6 5,042,401 - QEN71_RS22760 0.68 -1.3 5,042,436 + QEN71_RS22760 0.72 +0.7 5,042,437 - QEN71_RS22760 0.72 -0.0 5,042,445 + QEN71_RS22760 0.73 +0.3 5,042,445 + QEN71_RS22760 0.73 -0.2 5,042,445 + QEN71_RS22760 0.73 +1.1 5,042,445 + QEN71_RS22760 0.73 -2.1 5,042,445 + QEN71_RS22760 0.73 +0.8 5,042,445 + QEN71_RS22760 0.73 -1.1 5,042,445 + QEN71_RS22760 0.73 -2.0 5,042,445 + QEN71_RS22760 0.73 -1.8 5,042,445 + QEN71_RS22760 0.73 -0.4 5,042,445 + QEN71_RS22760 0.73 -1.5 5,042,445 + QEN71_RS22760 0.73 +2.4 5,042,445 + QEN71_RS22760 0.73 +0.8 5,042,445 + QEN71_RS22760 0.73 -1.1 5,042,445 + QEN71_RS22760 0.73 -0.7 5,042,445 + QEN71_RS22760 0.73 -0.8 5,042,445 + QEN71_RS22760 0.73 -0.1 5,042,445 + QEN71_RS22760 0.73 -3.5 5,042,446 - QEN71_RS22760 0.73 -1.2 5,042,446 - QEN71_RS22760 0.73 -1.9 5,042,446 - QEN71_RS22760 0.73 +1.6 5,042,446 - QEN71_RS22760 0.73 -0.2 5,042,446 - QEN71_RS22760 0.73 +0.8 5,042,446 - QEN71_RS22760 0.73 -1.6 5,042,500 - QEN71_RS22760 0.79 -1.8 5,042,500 - QEN71_RS22760 0.79 -0.9 5,042,500 - QEN71_RS22760 0.79 -0.4 5,042,500 - QEN71_RS22760 0.79 -0.2 5,042,500 - QEN71_RS22760 0.79 +0.4 5,042,538 + QEN71_RS22760 0.84 +0.4 5,042,538 + QEN71_RS22760 0.84 -2.0 5,042,538 + QEN71_RS22760 0.84 +0.1 5,042,538 + QEN71_RS22760 0.84 -2.5 5,042,538 + QEN71_RS22760 0.84 -0.6 5,042,538 + QEN71_RS22760 0.84 +0.1 5,042,538 + QEN71_RS22760 0.84 -0.8 5,042,538 + QEN71_RS22760 0.84 -0.9 5,042,538 + QEN71_RS22760 0.84 -1.8 5,042,538 + QEN71_RS22760 0.84 -0.4 5,042,538 + QEN71_RS22760 0.84 -1.9 5,042,538 + QEN71_RS22760 0.84 -0.2 5,042,538 + QEN71_RS22760 0.84 -0.7 5,042,538 + QEN71_RS22760 0.84 +1.9 5,042,539 - QEN71_RS22760 0.84 -1.2 5,042,539 - QEN71_RS22760 0.84 -0.7 5,042,539 - QEN71_RS22760 0.84 -1.2 5,042,733 - +0.4 5,043,247 - QEN71_RS22765 0.46 +0.4 5,043,736 - +0.4 5,043,807 + +0.1 5,043,808 - -2.1 5,043,808 - +0.1 5,043,808 - -1.2 5,043,808 - -0.3 5,043,876 - -1.3 5,043,876 - -0.6 5,043,876 - +2.2 5,043,878 + +1.5 5,043,878 + +1.2 5,043,878 + +1.4 5,043,878 + -2.2 5,043,878 + +0.2 5,043,878 + +0.2 5,043,878 + -0.7 5,043,879 - +1.8 5,043,879 - +1.3 5,043,879 - +1.0 5,043,879 - +1.7 5,043,998 + QEN71_RS22770 0.25 +0.8 5,043,998 + QEN71_RS22770 0.25 +0.5 5,043,999 - QEN71_RS22770 0.25 +0.4 5,044,116 - QEN71_RS22770 0.42 +1.3 5,044,193 + QEN71_RS22770 0.53 +0.0 5,044,193 + QEN71_RS22770 0.53 -1.7 5,044,194 - QEN71_RS22770 0.53 +0.4 5,044,194 - QEN71_RS22770 0.53 +0.1 5,044,330 - QEN71_RS22770 0.73 -0.6 5,044,355 + QEN71_RS22770 0.76 +0.8 5,044,356 - QEN71_RS22770 0.76 -0.0 5,044,356 - QEN71_RS22770 0.76 +0.5 5,044,356 - QEN71_RS22770 0.76 +0.1 5,044,490 + -0.7 5,044,490 + -0.7 5,044,491 - -0.8 5,044,491 - +0.5 5,044,561 + +0.1 5,044,561 + -2.0 5,044,561 + -0.4 5,044,561 + -0.6 5,044,562 - +0.3 5,044,562 - +0.6 5,044,562 - -0.9 5,044,562 - -0.6 5,044,633 - +0.9 5,044,633 - -1.1 5,044,799 + QEN71_RS22775 0.14 -0.1 5,044,800 - QEN71_RS22775 0.14 +0.5 5,044,800 - QEN71_RS22775 0.14 +1.5
Or see this region's nucleotide sequence