Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22075

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
4,897,052	-		QEN71_RS22070	0.29	-1.1
4,897,052	-		QEN71_RS22070	0.29	-0.9
4,897,297	+		QEN71_RS22070	0.49	+0.2
4,897,297	+		QEN71_RS22070	0.49	+1.0
4,897,297	+		QEN71_RS22070	0.49	-0.6
4,897,297	+		QEN71_RS22070	0.49	-0.9
4,897,298	-		QEN71_RS22070	0.49	+1.4
4,897,298	-		QEN71_RS22070	0.49	-0.3
4,897,366	+		QEN71_RS22070	0.55	-0.0
4,897,442	-		QEN71_RS22070	0.61	+0.3
4,897,442	-		QEN71_RS22070	0.61	-1.3
4,897,588	+		QEN71_RS22070	0.72	+0.9
4,897,588	+		QEN71_RS22070	0.72	+0.2
4,897,588	+		QEN71_RS22070	0.72	-1.9
4,897,589	-		QEN71_RS22070	0.72	-0.2
4,897,753	+		QEN71_RS22070	0.86	-0.9
4,897,973	+				+1.1
4,897,973	+				-0.3
4,897,973	+				+0.2
4,897,973	+				+0.7
4,897,974	-				+2.6
4,897,974	-				+0.3
4,897,974	-				+1.0
4,897,974	-				-0.5
4,897,974	-				-0.3
4,897,974	-				-1.6
4,897,974	-				+0.1
4,897,996	+				-0.2
4,897,996	+				-0.5
4,897,996	+				-0.4
4,897,996	+				+2.1
4,897,996	+				+0.1
4,897,996	+				+0.4
4,897,996	+				-0.2
4,897,996	+				-1.8
4,897,996	+				+3.8
4,897,996	+				+0.5
4,897,997	-				-1.1
4,897,997	-				-3.3
4,897,997	-				+0.1
4,897,997	-				+1.4
4,897,997	-				-0.2
4,897,997	-				-1.7
4,897,997	-				-0.5
4,897,997	-				-1.4
4,898,002	+				-0.0
4,898,002	+				+0.4
4,898,002	+				-0.9
4,898,003	-				-0.2
4,898,130	+		QEN71_RS22075	0.12	-0.6
4,898,130	+		QEN71_RS22075	0.12	-0.9
4,898,131	-		QEN71_RS22075	0.12	+0.4
4,898,315	+		QEN71_RS22075	0.30	+0.1
4,898,458	+		QEN71_RS22075	0.44	+1.4
4,898,458	+		QEN71_RS22075	0.44	+0.2
4,898,458	+		QEN71_RS22075	0.44	-0.2
4,898,458	+		QEN71_RS22075	0.44	-2.2
4,898,459	-		QEN71_RS22075	0.44	-0.6
4,898,459	-		QEN71_RS22075	0.44	+0.1
4,898,459	-		QEN71_RS22075	0.44	+0.6
4,898,459	-		QEN71_RS22075	0.44	-0.2
4,898,459	-		QEN71_RS22075	0.44	-1.5
4,898,459	-		QEN71_RS22075	0.44	+1.0
4,898,480	+		QEN71_RS22075	0.46	-0.4
4,898,480	+		QEN71_RS22075	0.46	-1.2
4,898,481	-		QEN71_RS22075	0.46	+1.7
4,898,481	-		QEN71_RS22075	0.46	-0.7
4,898,481	-		QEN71_RS22075	0.46	+0.1
4,898,654	+		QEN71_RS22075	0.63	-0.5
4,898,654	+		QEN71_RS22075	0.63	+1.5
4,898,654	+		QEN71_RS22075	0.63	+0.1
4,898,654	+		QEN71_RS22075	0.63	-0.3
4,898,654	+		QEN71_RS22075	0.63	-0.1
4,898,655	-		QEN71_RS22075	0.63	-0.6
4,898,655	-		QEN71_RS22075	0.63	-1.5
4,898,655	-		QEN71_RS22075	0.63	-0.3
4,898,655	-		QEN71_RS22075	0.63	+1.6
4,898,655	-		QEN71_RS22075	0.63	-0.0
4,898,774	+		QEN71_RS22075	0.74	+0.6
4,898,774	+		QEN71_RS22075	0.74	+0.9
4,898,774	+		QEN71_RS22075	0.74	-2.5
4,898,774	+		QEN71_RS22075	0.74	-2.0
4,898,774	+		QEN71_RS22075	0.74	-1.5
4,898,774	+		QEN71_RS22075	0.74	-0.2
4,898,774	+		QEN71_RS22075	0.74	-0.4
4,898,774	+		QEN71_RS22075	0.74	+0.1
4,898,774	+		QEN71_RS22075	0.74	+0.1
4,898,774	+		QEN71_RS22075	0.74	+0.1
4,898,775	-		QEN71_RS22075	0.75	+0.2
4,898,775	-		QEN71_RS22075	0.75	+0.2
4,898,775	-		QEN71_RS22075	0.75	-1.5
4,898,775	-		QEN71_RS22075	0.75	+1.2
4,898,780	+		QEN71_RS22075	0.75	-0.5
4,898,780	+		QEN71_RS22075	0.75	+1.3
4,898,780	+		QEN71_RS22075	0.75	+0.5
4,898,780	+		QEN71_RS22075	0.75	-1.2
4,898,780	+		QEN71_RS22075	0.75	-0.9
4,898,780	+		QEN71_RS22075	0.75	-0.4
4,898,780	+		QEN71_RS22075	0.75	-0.5
4,898,781	-		QEN71_RS22075	0.75	+0.5
4,898,781	-		QEN71_RS22075	0.75	-0.3
4,898,781	-		QEN71_RS22075	0.75	-0.3
4,898,781	-		QEN71_RS22075	0.75	+0.1
4,898,781	-		QEN71_RS22075	0.75	-0.4
4,898,781	-		QEN71_RS22075	0.75	-0.6
4,898,781	-		QEN71_RS22075	0.75	-0.2
4,898,781	-		QEN71_RS22075	0.75	+0.5
4,898,781	-		QEN71_RS22075	0.75	-1.3
4,898,781	-		QEN71_RS22075	0.75	-1.2
4,898,800	+		QEN71_RS22075	0.77	-0.5
4,898,800	+		QEN71_RS22075	0.77	-0.2
4,898,800	+		QEN71_RS22075	0.77	+0.5
4,898,801	-		QEN71_RS22075	0.77	+1.0
4,898,801	-		QEN71_RS22075	0.77	-0.1
4,898,801	-		QEN71_RS22075	0.77	+1.0
4,898,801	-		QEN71_RS22075	0.77	-1.9
4,898,818	+		QEN71_RS22075	0.79	-1.9
4,898,818	+		QEN71_RS22075	0.79	-0.3
4,898,965	-				-0.7
4,898,978	-				+0.4
4,899,005	-				+1.0
4,899,107	+				+0.1
4,899,107	+				-0.4
4,899,107	+				-0.5
4,899,107	+				-0.1
4,899,107	+				+2.2
4,899,107	+				-0.4
4,899,107	+				-0.4
4,899,108	-				+0.1
4,899,108	-				+0.8
4,899,108	-				+0.4
4,899,108	-				-0.9
4,899,108	-				+0.1
4,899,108	-				+0.5
4,899,108	-				+0.1
4,899,108	-				-0.3
4,899,108	-				+1.0
4,899,108	-				-0.3
4,899,108	-				+0.5
4,899,108	-				+0.1
4,899,108	-				-0.6
4,899,108	-				+0.8
4,899,108	-				-0.5
4,899,108	-				+1.8
4,899,108	-				-0.5
4,899,187	+				+2.1
4,899,187	+				-1.1
4,899,187	+				-0.2
4,899,230	+				+0.1
4,899,231	-				-1.6
4,899,231	-				-0.4
4,899,231	-				-0.2
4,899,231	-				+0.8
4,899,231	-				-0.6
4,899,231	-				+1.4
4,899,231	-				-0.9
4,899,231	-				+0.7
4,899,231	-				-0.1
4,899,413	+		QEN71_RS22080	0.42	-0.4
4,899,413	+		QEN71_RS22080	0.42	-0.7
4,899,413	+		QEN71_RS22080	0.42	+0.3
4,899,413	+		QEN71_RS22080	0.42	+0.0
4,899,413	+		QEN71_RS22080	0.42	+2.1
4,899,413	+		QEN71_RS22080	0.42	-1.4
4,899,413	+		QEN71_RS22080	0.42	+0.9
4,899,413	+		QEN71_RS22080	0.42	-0.5
4,899,413	+		QEN71_RS22080	0.42	-0.5
4,899,413	+		QEN71_RS22080	0.42	+0.4
4,899,413	+		QEN71_RS22080	0.42	+0.1
4,899,413	+		QEN71_RS22080	0.42	+0.8
4,899,414	-		QEN71_RS22080	0.42	-0.9
4,899,414	-		QEN71_RS22080	0.42	-1.1
4,899,414	-		QEN71_RS22080	0.42	-2.7
4,899,414	-		QEN71_RS22080	0.42	+0.1
4,899,414	-		QEN71_RS22080	0.42	+0.2
4,899,414	-		QEN71_RS22080	0.42	-1.9
4,899,414	-		QEN71_RS22080	0.42	+0.1
4,899,414	-		QEN71_RS22080	0.42	-0.6
4,899,414	-		QEN71_RS22080	0.42	-0.8
4,899,414	-		QEN71_RS22080	0.42	+1.1
4,899,414	-		QEN71_RS22080	0.42	-1.6
4,899,414	-		QEN71_RS22080	0.42	+0.6
4,899,414	-		QEN71_RS22080	0.42	-0.4
4,899,414	-		QEN71_RS22080	0.42	-2.7
4,899,414	-		QEN71_RS22080	0.42	-0.1
4,899,445	+		QEN71_RS22080	0.49	+1.2
4,899,445	+		QEN71_RS22080	0.49	+0.3
4,899,445	+		QEN71_RS22080	0.49	+0.8
4,899,446	-		QEN71_RS22080	0.50	-1.3
4,899,446	-		QEN71_RS22080	0.50	-1.5
4,899,678	+				-0.0
4,899,678	+				+2.1
4,899,679	-				-0.6
4,899,679	-				+0.7
4,899,679	-				-0.5
4,899,679	-				+0.2
4,899,679	-				-1.0