Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17330

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
3,845,421	+		QEN71_RS17325	0.58	-1.0
3,845,460	+		QEN71_RS17325	0.60	+0.2
3,845,461	-		QEN71_RS17325	0.60	+1.0
3,845,556	+		QEN71_RS17325	0.65	-1.8
3,845,556	+		QEN71_RS17325	0.65	-0.8
3,845,556	+		QEN71_RS17325	0.65	-0.3
3,845,556	+		QEN71_RS17325	0.65	+2.2
3,845,556	+		QEN71_RS17325	0.65	-2.5
3,845,557	-		QEN71_RS17325	0.65	-1.0
3,845,557	-		QEN71_RS17325	0.65	+0.3
3,845,557	-		QEN71_RS17325	0.65	+1.1
3,845,557	-		QEN71_RS17325	0.65	-0.4
3,845,682	+		QEN71_RS17325	0.71	-1.5
3,845,682	+		QEN71_RS17325	0.71	-1.5
3,845,682	+		QEN71_RS17325	0.71	+0.8
3,845,682	+		QEN71_RS17325	0.71	-0.7
3,845,682	+		QEN71_RS17325	0.71	-0.3
3,845,682	+		QEN71_RS17325	0.71	-0.6
3,845,683	-		QEN71_RS17325	0.71	-0.8
3,845,683	-		QEN71_RS17325	0.71	-0.6
3,845,683	-		QEN71_RS17325	0.71	-0.5
3,845,694	+		QEN71_RS17325	0.72	+0.1
3,845,695	-		QEN71_RS17325	0.72	+1.9
3,845,695	-		QEN71_RS17325	0.72	-1.0
3,845,695	-		QEN71_RS17325	0.72	-0.1
3,845,695	-		QEN71_RS17325	0.72	-0.0
3,845,695	-		QEN71_RS17325	0.72	+0.2
3,845,754	+		QEN71_RS17325	0.75	+0.1
3,845,755	-		QEN71_RS17325	0.75	+0.6
3,845,994	+		QEN71_RS17325	0.87	+0.9
3,846,163	+				+0.4
3,846,163	+				-1.5
3,846,163	+				-1.1
3,846,164	-				-0.2
3,846,164	-				-1.9
3,846,247	+				+0.3
3,846,247	+				+0.2
3,846,248	-				+0.2
3,846,269	+				-0.3
3,846,269	+				+0.3
3,846,368	+				-0.1
3,846,409	+				-1.0
3,846,409	+				+0.2
3,846,410	-				-0.1
3,846,412	+				+0.1
3,846,412	+				-1.1
3,846,413	-				-0.5
3,846,413	-				-0.7
3,846,413	-				+0.9
3,846,413	-				-0.5
3,846,518	+				+0.6
3,846,518	+				-0.8
3,846,518	+				-1.8
3,846,519	-				-0.5
3,846,996	+		QEN71_RS17330	0.24	-1.3
3,846,996	+		QEN71_RS17330	0.24	+0.1
3,846,997	-		QEN71_RS17330	0.24	-0.4
3,846,997	-		QEN71_RS17330	0.24	-0.0
3,847,011	+		QEN71_RS17330	0.25	-0.6
3,847,011	+		QEN71_RS17330	0.25	+1.3
3,847,011	+		QEN71_RS17330	0.25	-1.4
3,847,012	-		QEN71_RS17330	0.25	-0.8
3,847,239	+		QEN71_RS17330	0.34	-0.0
3,847,768	-		QEN71_RS17330	0.55	-1.9
3,847,992	+		QEN71_RS17330	0.64	-1.3
3,847,993	-		QEN71_RS17330	0.64	+0.2
3,848,031	+		QEN71_RS17330	0.65	-0.1
3,848,032	-		QEN71_RS17330	0.65	-0.3
3,848,032	-		QEN71_RS17330	0.65	+0.5
3,848,032	-		QEN71_RS17330	0.65	+0.3
3,848,057	+		QEN71_RS17330	0.66	-0.3
3,848,057	+		QEN71_RS17330	0.66	-0.0
3,848,057	+		QEN71_RS17330	0.66	-0.5
3,848,058	-		QEN71_RS17330	0.66	+1.2
3,848,058	-		QEN71_RS17330	0.66	-0.6
3,848,058	-		QEN71_RS17330	0.66	-0.1
3,848,058	-		QEN71_RS17330	0.66	+0.2
3,848,058	-		QEN71_RS17330	0.66	+0.5
3,848,058	-		QEN71_RS17330	0.66	-0.4
3,848,058	-		QEN71_RS17330	0.66	-0.4
3,848,096	+		QEN71_RS17330	0.68	-1.3
3,848,096	+		QEN71_RS17330	0.68	-0.0
3,848,111	+		QEN71_RS17330	0.68	+0.0
3,848,111	+		QEN71_RS17330	0.68	-1.8
3,848,111	+		QEN71_RS17330	0.68	-0.0
3,848,189	+		QEN71_RS17330	0.72	-1.3
3,848,189	+		QEN71_RS17330	0.72	-1.3
3,848,190	-		QEN71_RS17330	0.72	+0.4
3,848,190	-		QEN71_RS17330	0.72	-0.3
3,848,426	+		QEN71_RS17330	0.81	+0.6
3,848,426	+		QEN71_RS17330	0.81	+2.2
3,848,461	+		QEN71_RS17330	0.82	-0.5
3,848,461	+		QEN71_RS17330	0.82	-1.8
3,848,462	-		QEN71_RS17330	0.82	-0.4
3,848,462	-		QEN71_RS17330	0.82	+0.2
3,848,599	+		QEN71_RS17330	0.88	-0.5
3,848,599	+		QEN71_RS17330	0.88	-0.1
3,848,599	+		QEN71_RS17330	0.88	+1.4
3,848,599	+		QEN71_RS17330	0.88	-0.5
3,848,600	-		QEN71_RS17330	0.88	-0.4
3,848,673	-				+0.9
3,848,703	+				-0.4
3,848,874	+				+0.7
3,848,875	-				-0.6
3,848,875	-				+0.1
3,848,875	-				-0.1
3,848,875	-				+0.9
3,848,953	+				+0.6
3,849,363	+		QEN71_RS17335	0.51	+0.6
3,849,363	+		QEN71_RS17335	0.51	-1.2
3,849,363	+		QEN71_RS17335	0.51	+0.4
3,849,363	+		QEN71_RS17335	0.51	+0.3
3,849,363	+		QEN71_RS17335	0.51	-0.3
3,849,363	+		QEN71_RS17335	0.51	-1.3
3,849,363	+		QEN71_RS17335	0.51	-0.9
3,849,363	+		QEN71_RS17335	0.51	+0.3
3,849,363	+		QEN71_RS17335	0.51	+0.9
3,849,363	+		QEN71_RS17335	0.51	-0.5
3,849,363	+		QEN71_RS17335	0.51	+0.2
3,849,363	+		QEN71_RS17335	0.51	-0.3
3,849,363	+		QEN71_RS17335	0.51	+1.1
3,849,363	+		QEN71_RS17335	0.51	+0.7
3,849,363	+		QEN71_RS17335	0.51	-0.4
3,849,364	-		QEN71_RS17335	0.51	-0.1
3,849,364	-		QEN71_RS17335	0.51	-1.4
3,849,364	-		QEN71_RS17335	0.51	-0.0
3,849,364	-		QEN71_RS17335	0.51	-1.0
3,849,364	-		QEN71_RS17335	0.51	-1.8
3,849,364	-		QEN71_RS17335	0.51	+1.2
3,849,364	-		QEN71_RS17335	0.51	+2.8
3,849,364	-		QEN71_RS17335	0.51	-0.8
3,849,364	-		QEN71_RS17335	0.51	+1.6
3,849,364	-		QEN71_RS17335	0.51	-0.0
3,849,364	-		QEN71_RS17335	0.51	+0.6
3,849,364	-		QEN71_RS17335	0.51	+0.6
3,849,364	-		QEN71_RS17335	0.51	-0.0
3,849,365	+		QEN71_RS17335	0.51	-0.2
3,849,365	+		QEN71_RS17335	0.51	+0.5
3,849,365	+		QEN71_RS17335	0.51	-0.7
3,849,365	+		QEN71_RS17335	0.51	-0.8
3,849,365	+		QEN71_RS17335	0.51	+1.9
3,849,365	+		QEN71_RS17335	0.51	-0.7
3,849,365	+		QEN71_RS17335	0.51	-0.8
3,849,365	+		QEN71_RS17335	0.51	-1.2
3,849,365	+		QEN71_RS17335	0.51	+0.1
3,849,365	+		QEN71_RS17335	0.51	-1.4
3,849,365	+		QEN71_RS17335	0.51	+4.4
3,849,365	+		QEN71_RS17335	0.51	-2.5
3,849,365	+		QEN71_RS17335	0.51	-0.1
3,849,365	+		QEN71_RS17335	0.51	+0.6
3,849,365	+		QEN71_RS17335	0.51	-0.0
3,849,365	+		QEN71_RS17335	0.51	+1.8
3,849,365	+		QEN71_RS17335	0.51	+1.2
3,849,365	+		QEN71_RS17335	0.51	-0.0
3,849,365	+		QEN71_RS17335	0.51	-0.2
3,849,365	+		QEN71_RS17335	0.51	+0.2
3,849,365	+		QEN71_RS17335	0.51	+0.8
3,849,365	+		QEN71_RS17335	0.51	+0.4
3,849,365	+		QEN71_RS17335	0.51	-1.5
3,849,365	+		QEN71_RS17335	0.51	+0.3
3,849,365	+		QEN71_RS17335	0.51	+1.1
3,849,365	+		QEN71_RS17335	0.51	+0.6
3,849,365	+		QEN71_RS17335	0.51	+1.3
3,849,365	+		QEN71_RS17335	0.51	-0.7
3,849,365	+		QEN71_RS17335	0.51	-1.3
3,849,365	+		QEN71_RS17335	0.51	+0.8
3,849,365	+		QEN71_RS17335	0.51	-1.8
3,849,365	+		QEN71_RS17335	0.51	+0.2
3,849,366	-		QEN71_RS17335	0.51	-1.2
3,849,366	-		QEN71_RS17335	0.51	-0.5
3,849,366	-		QEN71_RS17335	0.51	+0.1
3,849,366	-		QEN71_RS17335	0.51	+0.2
3,849,366	-		QEN71_RS17335	0.51	-1.1
3,849,366	-		QEN71_RS17335	0.51	-1.7
3,849,366	-		QEN71_RS17335	0.51	+0.2
3,849,366	-		QEN71_RS17335	0.51	-0.3
3,849,366	-		QEN71_RS17335	0.51	-0.3
3,849,366	-		QEN71_RS17335	0.51	+0.4
3,849,366	-		QEN71_RS17335	0.51	-0.1
3,849,366	-		QEN71_RS17335	0.51	-0.1
3,849,366	-		QEN71_RS17335	0.51	-1.4
3,849,366	-		QEN71_RS17335	0.51	+0.2
3,849,366	-		QEN71_RS17335	0.51	-0.9
3,849,366	-		QEN71_RS17335	0.51	+1.2
3,849,366	-		QEN71_RS17335	0.51	-1.5
3,849,366	-		QEN71_RS17335	0.51	-0.5
3,849,366	-		QEN71_RS17335	0.51	-1.1
3,849,366	-		QEN71_RS17335	0.51	-0.5
3,849,366	-		QEN71_RS17335	0.51	-0.2
3,849,366	-		QEN71_RS17335	0.51	+0.7
3,849,366	-		QEN71_RS17335	0.51	-0.4
3,849,366	-		QEN71_RS17335	0.51	-0.9
3,849,366	-		QEN71_RS17335	0.51	+1.8
3,849,366	-		QEN71_RS17335	0.51	+1.3
3,849,366	-		QEN71_RS17335	0.51	+0.8
3,849,371	+		QEN71_RS17335	0.52	+1.8
3,849,371	+		QEN71_RS17335	0.52	+0.3
3,849,371	+		QEN71_RS17335	0.52	-1.1
3,849,371	+		QEN71_RS17335	0.52	-3.5
3,849,371	+		QEN71_RS17335	0.52	+1.3
3,849,371	+		QEN71_RS17335	0.52	-0.4
3,849,372	-		QEN71_RS17335	0.52	+0.5
3,849,372	-		QEN71_RS17335	0.52	-0.9
3,849,372	-		QEN71_RS17335	0.52	+1.5
3,849,372	-		QEN71_RS17335	0.52	-0.6
3,849,429	-		QEN71_RS17335	0.61	-0.6
3,849,429	-		QEN71_RS17335	0.61	-1.1
3,849,674	+				+0.6
3,849,674	+				+0.8
3,849,674	+				-2.3
3,849,674	+				+1.3
3,849,674	+				-0.7
3,849,674	+				+0.6
3,849,674	+				+0.8
3,849,674	+				+3.2
3,849,674	+				+1.1
3,849,674	+				-0.5
3,849,674	+				+0.3
3,849,674	+				-0.3
3,849,674	+				+1.3
3,849,674	+				-0.3
3,849,674	+				-0.7
3,849,674	+				-0.3
3,849,674	+				-0.4
3,849,674	+				+0.2
3,849,674	+				-1.0
3,849,674	+				-0.3
3,849,674	+				-0.4
3,849,674	+				-0.5
3,849,674	+				-0.3
3,849,674	+				-0.1
3,849,674	+				+0.2
3,849,674	+				-0.4
3,849,675	-				+0.0
3,849,675	-				-0.3
3,849,675	-				-0.3
3,849,675	-				+0.5
3,849,675	-				+0.6
3,849,675	-				-0.9
3,849,675	-				-0.3
3,849,675	-				-2.2
3,849,675	-				+0.8
3,849,675	-				+0.4
3,849,675	-				-1.1
3,849,675	-				-0.9
3,849,675	-				+1.5
3,849,675	-				+1.2
3,849,675	-				-1.4
3,849,675	-				-0.6
3,849,675	-				+0.4
3,849,675	-				+0.5
3,849,675	-				-1.9
3,849,675	-				+0.2
3,849,675	-				-0.7
3,849,675	-				-1.4
3,849,675	-				-0.6
3,849,675	-				-1.1
3,849,675	-				-1.6
3,849,675	-				+1.3
3,849,675	-				-0.3
3,849,675	-				-1.3
3,849,697	-				+0.3
3,849,697	-				-0.3
3,849,734	+				-0.1
3,849,795	+				-0.2
3,849,800	+				-0.5
3,849,800	+				-0.0
3,849,800	+				-0.3
3,849,800	+				-0.2
3,849,800	+				+0.2
3,849,801	-				+1.2