Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS07965 and QEN71_RS07970 are separated by 206 nucleotides QEN71_RS07970 and QEN71_RS07975 overlap by 31 nucleotides
QEN71_RS07965: QEN71_RS07965 - phosphoribosyltransferase, at 1,764,265 to 1,765,212
_RS07965
QEN71_RS07970: QEN71_RS07970 - molybdopterin-dependent oxidoreductase, at 1,765,419 to 1,765,943
_RS07970
QEN71_RS07975: QEN71_RS07975 - ATP-binding protein, at 1,765,913 to 1,767,766
_RS07975
Position (kb) 1765
1766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1764.600 kb on - strand, within QEN71_RS07965 at 1764.600 kb on - strand, within QEN71_RS07965 at 1764.651 kb on - strand, within QEN71_RS07965 at 1764.651 kb on - strand, within QEN71_RS07965 at 1764.651 kb on - strand, within QEN71_RS07965 at 1764.651 kb on - strand, within QEN71_RS07965 at 1764.701 kb on + strand, within QEN71_RS07965 at 1764.702 kb on - strand, within QEN71_RS07965 at 1764.702 kb on - strand, within QEN71_RS07965 at 1764.710 kb on + strand, within QEN71_RS07965 at 1764.711 kb on - strand, within QEN71_RS07965 at 1764.773 kb on + strand, within QEN71_RS07965 at 1764.773 kb on + strand, within QEN71_RS07965 at 1764.774 kb on - strand, within QEN71_RS07965 at 1764.774 kb on - strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.785 kb on + strand, within QEN71_RS07965 at 1764.786 kb on - strand, within QEN71_RS07965 at 1764.786 kb on - strand, within QEN71_RS07965 at 1764.839 kb on + strand, within QEN71_RS07965 at 1764.839 kb on + strand, within QEN71_RS07965 at 1764.839 kb on + strand, within QEN71_RS07965 at 1765.037 kb on + strand, within QEN71_RS07965 at 1765.037 kb on + strand, within QEN71_RS07965 at 1765.038 kb on - strand, within QEN71_RS07965 at 1765.038 kb on - strand, within QEN71_RS07965 at 1765.038 kb on - strand, within QEN71_RS07965 at 1765.038 kb on - strand, within QEN71_RS07965 at 1765.105 kb on + strand, within QEN71_RS07965 at 1765.105 kb on + strand, within QEN71_RS07965 at 1765.184 kb on + strand at 1765.184 kb on + strand at 1765.184 kb on + strand at 1765.184 kb on + strand at 1765.184 kb on + strand at 1765.185 kb on - strand at 1765.185 kb on - strand at 1765.185 kb on - strand at 1765.185 kb on - strand at 1765.195 kb on + strand at 1765.195 kb on + strand at 1765.195 kb on + strand at 1765.195 kb on + strand at 1765.196 kb on - strand at 1765.196 kb on - strand at 1765.196 kb on - strand at 1765.196 kb on - strand at 1765.196 kb on - strand at 1765.293 kb on + strand at 1765.293 kb on + strand at 1765.293 kb on + strand at 1765.293 kb on + strand at 1765.293 kb on + strand at 1765.294 kb on - strand at 1765.294 kb on - strand at 1765.294 kb on - strand at 1765.294 kb on - strand at 1765.306 kb on + strand at 1765.306 kb on + strand at 1765.306 kb on + strand at 1765.306 kb on + strand at 1765.306 kb on + strand at 1765.306 kb on + strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.307 kb on - strand at 1765.346 kb on + strand at 1765.346 kb on + strand at 1765.346 kb on + strand at 1765.347 kb on - strand at 1765.347 kb on - strand at 1765.622 kb on + strand, within QEN71_RS07970 at 1765.622 kb on + strand, within QEN71_RS07970 at 1765.623 kb on - strand, within QEN71_RS07970 at 1765.623 kb on - strand, within QEN71_RS07970 at 1765.623 kb on - strand, within QEN71_RS07970 at 1765.730 kb on + strand, within QEN71_RS07970 at 1765.731 kb on - strand, within QEN71_RS07970 at 1765.731 kb on - strand, within QEN71_RS07970 at 1765.731 kb on - strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.743 kb on + strand, within QEN71_RS07970 at 1765.744 kb on - strand, within QEN71_RS07970 at 1765.744 kb on - strand, within QEN71_RS07970 at 1765.744 kb on - strand, within QEN71_RS07970 at 1765.744 kb on - strand, within QEN71_RS07970 at 1765.744 kb on - strand, within QEN71_RS07970 at 1765.744 kb on - strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.749 kb on + strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.750 kb on - strand, within QEN71_RS07970 at 1765.780 kb on - strand, within QEN71_RS07970 at 1765.797 kb on + strand, within QEN71_RS07970 at 1765.797 kb on + strand, within QEN71_RS07970 at 1765.854 kb on + strand, within QEN71_RS07970 at 1765.912 kb on + strand at 1765.912 kb on + strand at 1765.913 kb on - strand at 1765.942 kb on - strand at 1765.942 kb on - strand at 1766.008 kb on + strand at 1766.008 kb on + strand at 1766.009 kb on - strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.021 kb on + strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.022 kb on - strand at 1766.030 kb on + strand at 1766.030 kb on + strand at 1766.078 kb on + strand at 1766.078 kb on + strand at 1766.078 kb on + strand at 1766.078 kb on + strand at 1766.078 kb on + strand at 1766.078 kb on + strand at 1766.079 kb on - strand at 1766.079 kb on - strand at 1766.090 kb on + strand at 1766.091 kb on - strand at 1766.091 kb on - strand at 1766.091 kb on - strand at 1766.091 kb on - strand at 1766.091 kb on - strand at 1766.091 kb on - strand at 1766.120 kb on + strand, within QEN71_RS07975 at 1766.121 kb on - strand, within QEN71_RS07975 at 1766.121 kb on - strand, within QEN71_RS07975 at 1766.121 kb on - strand, within QEN71_RS07975 at 1766.150 kb on + strand, within QEN71_RS07975 at 1766.151 kb on - strand, within QEN71_RS07975 at 1766.151 kb on - strand, within QEN71_RS07975 at 1766.174 kb on + strand, within QEN71_RS07975 at 1766.174 kb on + strand, within QEN71_RS07975 at 1766.175 kb on - strand, within QEN71_RS07975 at 1766.823 kb on - strand, within QEN71_RS07975 at 1766.823 kb on - strand, within QEN71_RS07975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,764,600 - QEN71_RS07965 0.35 -0.6 1,764,600 - QEN71_RS07965 0.35 +0.1 1,764,651 - QEN71_RS07965 0.41 -2.4 1,764,651 - QEN71_RS07965 0.41 -0.4 1,764,651 - QEN71_RS07965 0.41 -0.0 1,764,651 - QEN71_RS07965 0.41 +0.0 1,764,701 + QEN71_RS07965 0.46 -0.8 1,764,702 - QEN71_RS07965 0.46 -1.8 1,764,702 - QEN71_RS07965 0.46 -1.8 1,764,710 + QEN71_RS07965 0.47 +1.7 1,764,711 - QEN71_RS07965 0.47 -0.3 1,764,773 + QEN71_RS07965 0.54 -0.9 1,764,773 + QEN71_RS07965 0.54 +0.8 1,764,774 - QEN71_RS07965 0.54 -0.1 1,764,774 - QEN71_RS07965 0.54 -1.6 1,764,785 + QEN71_RS07965 0.55 +0.4 1,764,785 + QEN71_RS07965 0.55 -2.2 1,764,785 + QEN71_RS07965 0.55 +0.1 1,764,785 + QEN71_RS07965 0.55 +0.1 1,764,785 + QEN71_RS07965 0.55 -1.8 1,764,785 + QEN71_RS07965 0.55 -0.1 1,764,785 + QEN71_RS07965 0.55 -0.4 1,764,785 + QEN71_RS07965 0.55 -0.3 1,764,785 + QEN71_RS07965 0.55 -1.2 1,764,786 - QEN71_RS07965 0.55 -0.8 1,764,786 - QEN71_RS07965 0.55 -1.4 1,764,839 + QEN71_RS07965 0.61 -0.8 1,764,839 + QEN71_RS07965 0.61 -0.6 1,764,839 + QEN71_RS07965 0.61 -0.6 1,765,037 + QEN71_RS07965 0.81 -0.8 1,765,037 + QEN71_RS07965 0.81 +0.5 1,765,038 - QEN71_RS07965 0.82 -0.6 1,765,038 - QEN71_RS07965 0.82 +0.4 1,765,038 - QEN71_RS07965 0.82 -1.6 1,765,038 - QEN71_RS07965 0.82 -0.5 1,765,105 + QEN71_RS07965 0.89 -1.2 1,765,105 + QEN71_RS07965 0.89 -2.3 1,765,184 + -0.5 1,765,184 + -2.1 1,765,184 + +1.8 1,765,184 + +0.1 1,765,184 + -1.2 1,765,185 - -0.1 1,765,185 - -0.5 1,765,185 - -0.2 1,765,185 - +0.1 1,765,195 + +0.4 1,765,195 + -0.4 1,765,195 + -1.4 1,765,195 + -0.6 1,765,196 - -1.0 1,765,196 - -0.1 1,765,196 - -0.7 1,765,196 - -1.7 1,765,196 - -1.0 1,765,293 + -1.5 1,765,293 + -0.9 1,765,293 + -0.4 1,765,293 + -0.6 1,765,293 + -1.1 1,765,294 - -0.1 1,765,294 - -0.9 1,765,294 - -0.4 1,765,294 - -0.4 1,765,306 + -0.8 1,765,306 + -1.0 1,765,306 + -0.3 1,765,306 + -0.3 1,765,306 + -1.3 1,765,306 + +1.7 1,765,307 - +0.3 1,765,307 - +0.5 1,765,307 - -0.2 1,765,307 - -0.4 1,765,307 - +0.3 1,765,307 - -1.2 1,765,307 - -1.4 1,765,307 - -0.5 1,765,346 + -2.2 1,765,346 + -0.5 1,765,346 + +0.4 1,765,347 - -0.4 1,765,347 - -2.7 1,765,622 + QEN71_RS07970 0.39 +1.5 1,765,622 + QEN71_RS07970 0.39 +2.1 1,765,623 - QEN71_RS07970 0.39 -0.1 1,765,623 - QEN71_RS07970 0.39 +0.8 1,765,623 - QEN71_RS07970 0.39 -1.8 1,765,730 + QEN71_RS07970 0.59 -1.8 1,765,731 - QEN71_RS07970 0.59 -0.6 1,765,731 - QEN71_RS07970 0.59 -2.0 1,765,731 - QEN71_RS07970 0.59 +0.2 1,765,743 + QEN71_RS07970 0.62 +0.2 1,765,743 + QEN71_RS07970 0.62 +0.1 1,765,743 + QEN71_RS07970 0.62 -0.8 1,765,743 + QEN71_RS07970 0.62 -0.3 1,765,743 + QEN71_RS07970 0.62 +1.2 1,765,743 + QEN71_RS07970 0.62 +0.3 1,765,743 + QEN71_RS07970 0.62 +1.3 1,765,744 - QEN71_RS07970 0.62 -0.7 1,765,744 - QEN71_RS07970 0.62 -0.7 1,765,744 - QEN71_RS07970 0.62 +1.6 1,765,744 - QEN71_RS07970 0.62 -0.2 1,765,744 - QEN71_RS07970 0.62 +0.6 1,765,744 - QEN71_RS07970 0.62 -0.9 1,765,749 + QEN71_RS07970 0.63 -1.3 1,765,749 + QEN71_RS07970 0.63 -0.0 1,765,749 + QEN71_RS07970 0.63 +0.8 1,765,749 + QEN71_RS07970 0.63 -1.1 1,765,749 + QEN71_RS07970 0.63 -1.1 1,765,749 + QEN71_RS07970 0.63 -1.2 1,765,749 + QEN71_RS07970 0.63 +0.5 1,765,749 + QEN71_RS07970 0.63 -1.4 1,765,750 - QEN71_RS07970 0.63 -1.1 1,765,750 - QEN71_RS07970 0.63 -0.1 1,765,750 - QEN71_RS07970 0.63 -1.5 1,765,750 - QEN71_RS07970 0.63 -1.2 1,765,750 - QEN71_RS07970 0.63 -0.5 1,765,750 - QEN71_RS07970 0.63 -0.8 1,765,750 - QEN71_RS07970 0.63 -0.1 1,765,750 - QEN71_RS07970 0.63 +0.8 1,765,750 - QEN71_RS07970 0.63 -3.4 1,765,750 - QEN71_RS07970 0.63 -0.1 1,765,750 - QEN71_RS07970 0.63 -1.8 1,765,750 - QEN71_RS07970 0.63 -0.3 1,765,750 - QEN71_RS07970 0.63 -0.2 1,765,750 - QEN71_RS07970 0.63 -0.1 1,765,750 - QEN71_RS07970 0.63 -0.4 1,765,750 - QEN71_RS07970 0.63 -1.3 1,765,750 - QEN71_RS07970 0.63 +1.4 1,765,780 - QEN71_RS07970 0.69 -1.9 1,765,797 + QEN71_RS07970 0.72 -0.0 1,765,797 + QEN71_RS07970 0.72 +0.6 1,765,854 + QEN71_RS07970 0.83 -0.5 1,765,912 + -0.2 1,765,912 + -0.1 1,765,913 - -0.7 1,765,942 - -0.4 1,765,942 - +0.1 1,766,008 + -1.1 1,766,008 + -0.4 1,766,009 - -0.8 1,766,021 + -2.0 1,766,021 + +0.4 1,766,021 + -0.4 1,766,021 + -0.0 1,766,021 + +0.6 1,766,021 + -0.4 1,766,021 + +0.1 1,766,021 + -0.5 1,766,022 - -0.3 1,766,022 - -1.5 1,766,022 - -0.7 1,766,022 - -0.2 1,766,022 - -0.9 1,766,022 - +0.2 1,766,022 - -0.5 1,766,022 - +0.1 1,766,022 - +0.3 1,766,030 + -2.2 1,766,030 + -0.1 1,766,078 + -1.1 1,766,078 + -0.8 1,766,078 + -0.7 1,766,078 + -0.1 1,766,078 + -0.6 1,766,078 + -1.8 1,766,079 - -2.2 1,766,079 - +0.3 1,766,090 + -0.9 1,766,091 - -0.9 1,766,091 - -0.2 1,766,091 - -0.7 1,766,091 - -1.0 1,766,091 - +0.9 1,766,091 - +0.3 1,766,120 + QEN71_RS07975 0.11 +2.1 1,766,121 - QEN71_RS07975 0.11 -0.4 1,766,121 - QEN71_RS07975 0.11 -0.2 1,766,121 - QEN71_RS07975 0.11 +0.3 1,766,150 + QEN71_RS07975 0.13 -1.1 1,766,151 - QEN71_RS07975 0.13 -0.4 1,766,151 - QEN71_RS07975 0.13 -0.2 1,766,174 + QEN71_RS07975 0.14 -0.4 1,766,174 + QEN71_RS07975 0.14 +0.3 1,766,175 - QEN71_RS07975 0.14 -0.0 1,766,823 - QEN71_RS07975 0.49 -2.7 1,766,823 - QEN71_RS07975 0.49 -0.0
Or see this region's nucleotide sequence