Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05870

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05860 and QEN71_RS05865 are separated by 51 nucleotidesQEN71_RS05865 and QEN71_RS05870 are separated by 147 nucleotidesQEN71_RS05870 and QEN71_RS05875 overlap by 4 nucleotidesQEN71_RS05875 and QEN71_RS05880 are separated by 139 nucleotides QEN71_RS05860: QEN71_RS05860 - DNA internalization-related competence protein ComEC/Rec2, at 1,300,270 to 1,302,780 _RS05860 QEN71_RS05865: QEN71_RS05865 - alpha/beta hydrolase, at 1,302,832 to 1,303,626 _RS05865 QEN71_RS05870: QEN71_RS05870 - CTP synthase, at 1,303,774 to 1,305,435 _RS05870 QEN71_RS05875: QEN71_RS05875 - 3-deoxy-8-phosphooctulonate synthase, at 1,305,432 to 1,306,286 _RS05875 QEN71_RS05880: QEN71_RS05880 - phosphopyruvate hydratase, at 1,306,426 to 1,307,709 _RS05880 Position (kb) 1303 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2at 1302.778 kb on + strandat 1302.801 kb on + strandat 1302.802 kb on - strandat 1302.883 kb on + strandat 1302.884 kb on - strandat 1302.884 kb on - strandat 1302.884 kb on - strandat 1302.884 kb on - strandat 1302.916 kb on + strand, within QEN71_RS05865at 1302.959 kb on - strand, within QEN71_RS05865at 1303.021 kb on + strand, within QEN71_RS05865at 1303.064 kb on - strand, within QEN71_RS05865at 1303.167 kb on - strand, within QEN71_RS05865at 1303.396 kb on + strand, within QEN71_RS05865at 1303.396 kb on + strand, within QEN71_RS05865at 1303.396 kb on + strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.397 kb on - strand, within QEN71_RS05865at 1303.413 kb on + strand, within QEN71_RS05865at 1303.413 kb on + strand, within QEN71_RS05865at 1303.413 kb on + strand, within QEN71_RS05865at 1303.413 kb on + strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.414 kb on - strand, within QEN71_RS05865at 1303.462 kb on - strand, within QEN71_RS05865at 1303.647 kb on - strandat 1303.743 kb on + strandat 1303.743 kb on + strandat 1306.312 kb on + strandat 1306.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,302,778 + -1.3
1,302,801 + -0.7
1,302,802 - +2.4
1,302,883 + -0.0
1,302,884 - +1.0
1,302,884 - +1.3
1,302,884 - -0.4
1,302,884 - -1.7
1,302,916 + QEN71_RS05865 0.11 +0.4
1,302,959 - QEN71_RS05865 0.16 -1.3
1,303,021 + QEN71_RS05865 0.24 +1.9
1,303,064 - QEN71_RS05865 0.29 -0.2
1,303,167 - QEN71_RS05865 0.42 +0.8
1,303,396 + QEN71_RS05865 0.71 -0.9
1,303,396 + QEN71_RS05865 0.71 -0.1
1,303,396 + QEN71_RS05865 0.71 -0.6
1,303,397 - QEN71_RS05865 0.71 -2.0
1,303,397 - QEN71_RS05865 0.71 +0.4
1,303,397 - QEN71_RS05865 0.71 -1.2
1,303,397 - QEN71_RS05865 0.71 +0.0
1,303,397 - QEN71_RS05865 0.71 -0.6
1,303,397 - QEN71_RS05865 0.71 -0.2
1,303,397 - QEN71_RS05865 0.71 +0.6
1,303,397 - QEN71_RS05865 0.71 +0.0
1,303,413 + QEN71_RS05865 0.73 -1.7
1,303,413 + QEN71_RS05865 0.73 -1.5
1,303,413 + QEN71_RS05865 0.73 -1.0
1,303,413 + QEN71_RS05865 0.73 -0.2
1,303,414 - QEN71_RS05865 0.73 +0.6
1,303,414 - QEN71_RS05865 0.73 +0.4
1,303,414 - QEN71_RS05865 0.73 +0.3
1,303,414 - QEN71_RS05865 0.73 +0.3
1,303,414 - QEN71_RS05865 0.73 +0.3
1,303,414 - QEN71_RS05865 0.73 -1.1
1,303,414 - QEN71_RS05865 0.73 -0.4
1,303,462 - QEN71_RS05865 0.79 -0.7
1,303,647 - -1.0
1,303,743 + -0.3
1,303,743 + +0.3
1,306,312 + -1.2
1,306,396 + -0.3

Or see this region's nucleotide sequence