Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04305

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04300 and QEN71_RS04305 are separated by 29 nucleotidesQEN71_RS04305 and QEN71_RS04310 overlap by 4 nucleotidesQEN71_RS04310 and QEN71_RS04315 are separated by 83 nucleotides QEN71_RS04300: QEN71_RS04300 - hypothetical protein, at 947,314 to 948,711 _RS04300 QEN71_RS04305: QEN71_RS04305 - hypothetical protein, at 948,741 to 949,352 _RS04305 QEN71_RS04310: QEN71_RS04310 - hypothetical protein, at 949,349 to 949,861 _RS04310 QEN71_RS04315: QEN71_RS04315 - hypothetical protein, at 949,945 to 950,427 _RS04315 Position (kb) 948 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 947.884 kb on + strand, within QEN71_RS04300at 947.885 kb on + strand, within QEN71_RS04300at 947.885 kb on + strand, within QEN71_RS04300at 947.885 kb on + strand, within QEN71_RS04300at 947.886 kb on - strand, within QEN71_RS04300at 947.886 kb on - strand, within QEN71_RS04300at 947.886 kb on - strand, within QEN71_RS04300at 947.973 kb on - strand, within QEN71_RS04300at 947.993 kb on + strand, within QEN71_RS04300at 947.994 kb on - strand, within QEN71_RS04300at 948.002 kb on + strand, within QEN71_RS04300at 948.002 kb on + strand, within QEN71_RS04300at 948.002 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.099 kb on - strand, within QEN71_RS04300at 948.114 kb on - strand, within QEN71_RS04300at 948.176 kb on + strand, within QEN71_RS04300at 948.176 kb on + strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.194 kb on + strand, within QEN71_RS04300at 948.194 kb on + strand, within QEN71_RS04300at 948.195 kb on - strand, within QEN71_RS04300at 948.195 kb on - strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.333 kb on - strand, within QEN71_RS04300at 948.333 kb on - strand, within QEN71_RS04300at 948.333 kb on - strand, within QEN71_RS04300at 948.338 kb on + strand, within QEN71_RS04300at 948.338 kb on + strand, within QEN71_RS04300at 948.356 kb on + strand, within QEN71_RS04300at 948.357 kb on - strand, within QEN71_RS04300at 948.372 kb on - strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.512 kb on + strand, within QEN71_RS04300at 948.696 kb on + strandat 948.696 kb on + strandat 948.696 kb on + strandat 948.696 kb on + strandat 948.697 kb on - strandat 948.697 kb on - strandat 948.725 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.742 kb on + strandat 948.794 kb on + strandat 948.795 kb on - strandat 948.930 kb on + strand, within QEN71_RS04305at 948.931 kb on - strand, within QEN71_RS04305at 949.006 kb on - strand, within QEN71_RS04305at 949.273 kb on - strand, within QEN71_RS04305at 949.867 kb on + strandat 949.946 kb on + strandat 949.947 kb on - strandat 949.958 kb on + strandat 949.959 kb on - strandat 949.999 kb on - strand, within QEN71_RS04315at 949.999 kb on - strand, within QEN71_RS04315at 949.999 kb on - strand, within QEN71_RS04315at 950.002 kb on + strand, within QEN71_RS04315at 950.002 kb on + strand, within QEN71_RS04315at 950.002 kb on + strand, within QEN71_RS04315at 950.003 kb on - strand, within QEN71_RS04315at 950.003 kb on - strand, within QEN71_RS04315at 950.003 kb on - strand, within QEN71_RS04315at 950.215 kb on - strand, within QEN71_RS04315

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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947,884 + QEN71_RS04300 0.41 +0.1
947,885 + QEN71_RS04300 0.41 +0.1
947,885 + QEN71_RS04300 0.41 -1.8
947,885 + QEN71_RS04300 0.41 -1.9
947,886 - QEN71_RS04300 0.41 -0.5
947,886 - QEN71_RS04300 0.41 +0.3
947,886 - QEN71_RS04300 0.41 +0.8
947,973 - QEN71_RS04300 0.47 +1.7
947,993 + QEN71_RS04300 0.49 -0.2
947,994 - QEN71_RS04300 0.49 +0.3
948,002 + QEN71_RS04300 0.49 +0.1
948,002 + QEN71_RS04300 0.49 +0.6
948,002 + QEN71_RS04300 0.49 +1.6
948,098 + QEN71_RS04300 0.56 -2.0
948,098 + QEN71_RS04300 0.56 +0.2
948,098 + QEN71_RS04300 0.56 +0.9
948,098 + QEN71_RS04300 0.56 +1.5
948,099 - QEN71_RS04300 0.56 +1.3
948,114 - QEN71_RS04300 0.57 -3.2
948,176 + QEN71_RS04300 0.62 +0.3
948,176 + QEN71_RS04300 0.62 +0.3
948,177 - QEN71_RS04300 0.62 -0.2
948,177 - QEN71_RS04300 0.62 +0.6
948,177 - QEN71_RS04300 0.62 +2.8
948,177 - QEN71_RS04300 0.62 +0.9
948,177 - QEN71_RS04300 0.62 +0.3
948,177 - QEN71_RS04300 0.62 -1.0
948,177 - QEN71_RS04300 0.62 +0.3
948,194 + QEN71_RS04300 0.63 +1.0
948,194 + QEN71_RS04300 0.63 +0.8
948,195 - QEN71_RS04300 0.63 +0.1
948,195 - QEN71_RS04300 0.63 +1.2
948,332 + QEN71_RS04300 0.73 +0.6
948,332 + QEN71_RS04300 0.73 +0.3
948,332 + QEN71_RS04300 0.73 -0.2
948,332 + QEN71_RS04300 0.73 -2.2
948,332 + QEN71_RS04300 0.73 +1.1
948,333 - QEN71_RS04300 0.73 +0.4
948,333 - QEN71_RS04300 0.73 +0.5
948,333 - QEN71_RS04300 0.73 +0.2
948,338 + QEN71_RS04300 0.73 +0.7
948,338 + QEN71_RS04300 0.73 +0.0
948,356 + QEN71_RS04300 0.75 -0.8
948,357 - QEN71_RS04300 0.75 -1.1
948,372 - QEN71_RS04300 0.76 +1.0
948,437 + QEN71_RS04300 0.80 -0.6
948,437 + QEN71_RS04300 0.80 +0.4
948,437 + QEN71_RS04300 0.80 +1.5
948,437 + QEN71_RS04300 0.80 +0.3
948,437 + QEN71_RS04300 0.80 +0.5
948,437 + QEN71_RS04300 0.80 +1.9
948,437 + QEN71_RS04300 0.80 +0.5
948,437 + QEN71_RS04300 0.80 -0.1
948,438 - QEN71_RS04300 0.80 +1.3
948,438 - QEN71_RS04300 0.80 -1.1
948,438 - QEN71_RS04300 0.80 -0.9
948,438 - QEN71_RS04300 0.80 +1.6
948,438 - QEN71_RS04300 0.80 -0.7
948,438 - QEN71_RS04300 0.80 -0.8
948,476 + QEN71_RS04300 0.83 +1.0
948,476 + QEN71_RS04300 0.83 +0.6
948,476 + QEN71_RS04300 0.83 -0.2
948,476 + QEN71_RS04300 0.83 -0.5
948,476 + QEN71_RS04300 0.83 +0.5
948,477 - QEN71_RS04300 0.83 +0.1
948,477 - QEN71_RS04300 0.83 -0.1
948,477 - QEN71_RS04300 0.83 -0.2
948,477 - QEN71_RS04300 0.83 +1.7
948,477 - QEN71_RS04300 0.83 +2.0
948,477 - QEN71_RS04300 0.83 +0.2
948,477 - QEN71_RS04300 0.83 +0.0
948,477 - QEN71_RS04300 0.83 +0.7
948,512 + QEN71_RS04300 0.86 +1.5
948,696 + -0.4
948,696 + -0.3
948,696 + -3.7
948,696 + -0.9
948,697 - -0.0
948,697 - +3.0
948,725 + +1.0
948,728 + -0.4
948,728 + +1.2
948,728 + +0.2
948,728 + -0.0
948,728 + +0.6
948,728 + +0.4
948,728 + -2.6
948,728 + +2.4
948,728 + +0.0
948,728 + +0.0
948,729 - -1.7
948,729 - +0.0
948,729 - +1.0
948,729 - -0.2
948,729 - -1.3
948,729 - -2.2
948,729 - -0.7
948,729 - +0.0
948,729 - +0.8
948,729 - -0.8
948,729 - -1.1
948,729 - -1.1
948,742 + +0.7
948,794 + +0.0
948,795 - -0.8
948,930 + QEN71_RS04305 0.31 -0.2
948,931 - QEN71_RS04305 0.31 +0.3
949,006 - QEN71_RS04305 0.43 +2.5
949,273 - QEN71_RS04305 0.87 +0.5
949,867 + +0.1
949,946 + +0.3
949,947 - -0.5
949,958 + +0.0
949,959 - -0.3
949,999 - QEN71_RS04315 0.11 +0.3
949,999 - QEN71_RS04315 0.11 +0.8
949,999 - QEN71_RS04315 0.11 +0.6
950,002 + QEN71_RS04315 0.12 -1.7
950,002 + QEN71_RS04315 0.12 -1.4
950,002 + QEN71_RS04315 0.12 -1.2
950,003 - QEN71_RS04315 0.12 -2.2
950,003 - QEN71_RS04315 0.12 -1.0
950,003 - QEN71_RS04315 0.12 -2.4
950,215 - QEN71_RS04315 0.56 -1.3

Or see this region's nucleotide sequence