Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04055 and QEN71_RS04060 are separated by 117 nucleotides QEN71_RS04060 and QEN71_RS04065 are separated by 213 nucleotides QEN71_RS04065 and QEN71_RS04070 are separated by 69 nucleotides
QEN71_RS04055: QEN71_RS04055 - DNA gyrase subunit A, at 896,705 to 899,332
_RS04055
QEN71_RS04060: QEN71_RS04060 - DUF2059 domain-containing protein, at 899,450 to 900,058
_RS04060
QEN71_RS04065: QEN71_RS04065 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 900,272 to 901,354
_RS04065
QEN71_RS04070: QEN71_RS04070 - prephenate dehydratase, at 901,424 to 902,506
_RS04070
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 899.330 kb on + strand at 899.330 kb on + strand at 899.354 kb on + strand at 899.354 kb on + strand at 899.354 kb on + strand at 899.354 kb on + strand at 899.354 kb on + strand at 899.361 kb on + strand at 899.361 kb on + strand at 899.428 kb on + strand at 899.428 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.056 kb on + strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.057 kb on - strand at 900.605 kb on + strand, within QEN71_RS04065 at 900.605 kb on + strand, within QEN71_RS04065 at 900.605 kb on + strand, within QEN71_RS04065 at 900.605 kb on + strand, within QEN71_RS04065 at 900.701 kb on + strand, within QEN71_RS04065 at 900.701 kb on + strand, within QEN71_RS04065 at 900.701 kb on + strand, within QEN71_RS04065 at 900.769 kb on + strand, within QEN71_RS04065 at 900.769 kb on + strand, within QEN71_RS04065 at 900.769 kb on + strand, within QEN71_RS04065 at 900.769 kb on + strand, within QEN71_RS04065 at 900.830 kb on + strand, within QEN71_RS04065 at 900.830 kb on + strand, within QEN71_RS04065 at 900.830 kb on + strand, within QEN71_RS04065 at 900.830 kb on + strand, within QEN71_RS04065 at 900.862 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.977 kb on + strand, within QEN71_RS04065 at 900.995 kb on + strand, within QEN71_RS04065 at 900.995 kb on + strand, within QEN71_RS04065 at 900.995 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.004 kb on + strand, within QEN71_RS04065 at 901.094 kb on + strand, within QEN71_RS04065 at 901.094 kb on + strand, within QEN71_RS04065 at 901.094 kb on + strand, within QEN71_RS04065 at 901.094 kb on + strand, within QEN71_RS04065 at 901.094 kb on + strand, within QEN71_RS04065 at 901.164 kb on + strand, within QEN71_RS04065 at 901.164 kb on + strand, within QEN71_RS04065 at 901.164 kb on + strand, within QEN71_RS04065 at 901.164 kb on + strand, within QEN71_RS04065 at 901.322 kb on + strand at 901.322 kb on + strand at 901.322 kb on + strand at 901.322 kb on + strand at 901.322 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.709 kb on + strand, within QEN71_RS04070 at 901.730 kb on + strand, within QEN71_RS04070 at 901.730 kb on + strand, within QEN71_RS04070 at 901.730 kb on + strand, within QEN71_RS04070 at 901.730 kb on + strand, within QEN71_RS04070 at 901.730 kb on + strand, within QEN71_RS04070 at 901.754 kb on + strand, within QEN71_RS04070 at 902.249 kb on + strand, within QEN71_RS04070
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 899,330 + +0.3 899,330 + +1.2 899,354 + -0.3 899,354 + +1.2 899,354 + -0.1 899,354 + -0.3 899,354 + +0.9 899,361 + -0.2 899,361 + -0.7 899,428 + +0.0 899,428 + +0.0 900,056 + +1.5 900,056 + -0.8 900,056 + +0.2 900,056 + +1.2 900,056 + -0.2 900,056 + -0.3 900,056 + +0.1 900,056 + -1.9 900,056 + -0.7 900,056 + +0.9 900,056 + +0.1 900,057 - +0.2 900,057 - +1.5 900,057 - -2.2 900,057 - -0.4 900,057 - +0.5 900,057 - -0.7 900,057 - -0.5 900,057 - +0.3 900,057 - -1.7 900,057 - -0.8 900,605 + QEN71_RS04065 0.31 -0.7 900,605 + QEN71_RS04065 0.31 +0.5 900,605 + QEN71_RS04065 0.31 +2.2 900,605 + QEN71_RS04065 0.31 -0.0 900,701 + QEN71_RS04065 0.40 -1.0 900,701 + QEN71_RS04065 0.40 -1.9 900,701 + QEN71_RS04065 0.40 -3.4 900,769 + QEN71_RS04065 0.46 -1.0 900,769 + QEN71_RS04065 0.46 -0.9 900,769 + QEN71_RS04065 0.46 -2.5 900,769 + QEN71_RS04065 0.46 -0.9 900,830 + QEN71_RS04065 0.52 -1.5 900,830 + QEN71_RS04065 0.52 -0.4 900,830 + QEN71_RS04065 0.52 -0.9 900,830 + QEN71_RS04065 0.52 -0.0 900,862 + QEN71_RS04065 0.54 -0.3 900,977 + QEN71_RS04065 0.65 -1.7 900,977 + QEN71_RS04065 0.65 +0.4 900,977 + QEN71_RS04065 0.65 +0.2 900,977 + QEN71_RS04065 0.65 -0.3 900,977 + QEN71_RS04065 0.65 -1.9 900,977 + QEN71_RS04065 0.65 -0.5 900,977 + QEN71_RS04065 0.65 -0.7 900,977 + QEN71_RS04065 0.65 -0.5 900,995 + QEN71_RS04065 0.67 -1.7 900,995 + QEN71_RS04065 0.67 -0.8 900,995 + QEN71_RS04065 0.67 -1.1 901,004 + QEN71_RS04065 0.68 +0.4 901,004 + QEN71_RS04065 0.68 -0.8 901,004 + QEN71_RS04065 0.68 +0.2 901,004 + QEN71_RS04065 0.68 +0.1 901,004 + QEN71_RS04065 0.68 +1.3 901,004 + QEN71_RS04065 0.68 -1.5 901,004 + QEN71_RS04065 0.68 +2.8 901,004 + QEN71_RS04065 0.68 +0.1 901,004 + QEN71_RS04065 0.68 +0.2 901,004 + QEN71_RS04065 0.68 +0.0 901,004 + QEN71_RS04065 0.68 -1.1 901,004 + QEN71_RS04065 0.68 +0.3 901,094 + QEN71_RS04065 0.76 -2.9 901,094 + QEN71_RS04065 0.76 -1.1 901,094 + QEN71_RS04065 0.76 -0.2 901,094 + QEN71_RS04065 0.76 -0.5 901,094 + QEN71_RS04065 0.76 +0.4 901,164 + QEN71_RS04065 0.82 -1.1 901,164 + QEN71_RS04065 0.82 +0.0 901,164 + QEN71_RS04065 0.82 -0.3 901,164 + QEN71_RS04065 0.82 -0.6 901,322 + +0.1 901,322 + +0.8 901,322 + -0.9 901,322 + -0.3 901,322 + +0.0 901,417 + +1.9 901,417 + +0.4 901,417 + +0.3 901,417 + +0.7 901,417 + -0.7 901,709 + QEN71_RS04070 0.26 -0.5 901,730 + QEN71_RS04070 0.28 -2.2 901,730 + QEN71_RS04070 0.28 -1.1 901,730 + QEN71_RS04070 0.28 -1.0 901,730 + QEN71_RS04070 0.28 -0.6 901,730 + QEN71_RS04070 0.28 +1.2 901,754 + QEN71_RS04070 0.30 -1.9 902,249 + QEN71_RS04070 0.76 -1.3
Or see this region's nucleotide sequence