Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03820

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03805 and QEN71_RS03810 overlap by 20 nucleotidesQEN71_RS03810 and QEN71_RS03815 are separated by 2 nucleotidesQEN71_RS03815 and QEN71_RS03820 overlap by 1 nucleotidesQEN71_RS03820 and QEN71_RS03825 overlap by 4 nucleotides QEN71_RS03805: QEN71_RS03805 - lysophospholipid acyltransferase family protein, at 841,090 to 841,884 _RS03805 QEN71_RS03810: QEN71_RS03810 - phosphopantetheine-binding protein, at 841,865 to 842,164 _RS03810 QEN71_RS03815: QEN71_RS03815 - acyl carrier protein, at 842,167 to 842,418 _RS03815 QEN71_RS03820: QEN71_RS03820 - hypothetical protein, at 842,418 to 843,116 _RS03820 QEN71_RS03825: QEN71_RS03825 - AMP-binding protein, at 843,113 to 844,801 _RS03825 Position (kb) 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 841.486 kb on + strand, within QEN71_RS03805at 841.486 kb on + strand, within QEN71_RS03805at 841.486 kb on + strand, within QEN71_RS03805at 841.487 kb on - strand, within QEN71_RS03805at 841.487 kb on - strand, within QEN71_RS03805at 841.517 kb on + strand, within QEN71_RS03805at 841.517 kb on + strand, within QEN71_RS03805at 841.518 kb on - strand, within QEN71_RS03805at 841.518 kb on - strand, within QEN71_RS03805at 841.518 kb on - strand, within QEN71_RS03805at 841.549 kb on + strand, within QEN71_RS03805at 841.549 kb on + strand, within QEN71_RS03805at 841.549 kb on + strand, within QEN71_RS03805at 841.550 kb on - strand, within QEN71_RS03805at 841.550 kb on - strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.864 kb on + strandat 841.864 kb on + strandat 841.864 kb on + strandat 841.865 kb on - strandat 841.865 kb on - strandat 842.030 kb on + strand, within QEN71_RS03810at 842.030 kb on + strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.090 kb on - strand, within QEN71_RS03810at 842.143 kb on + strandat 842.551 kb on + strand, within QEN71_RS03820at 842.551 kb on + strand, within QEN71_RS03820at 842.551 kb on + strand, within QEN71_RS03820at 842.552 kb on - strand, within QEN71_RS03820at 842.569 kb on - strand, within QEN71_RS03820at 842.687 kb on - strand, within QEN71_RS03820at 842.734 kb on + strand, within QEN71_RS03820at 842.734 kb on + strand, within QEN71_RS03820at 842.735 kb on - strand, within QEN71_RS03820at 842.735 kb on - strand, within QEN71_RS03820at 842.735 kb on - strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.970 kb on + strand, within QEN71_RS03820at 842.982 kb on + strand, within QEN71_RS03820at 842.982 kb on + strand, within QEN71_RS03820at 842.983 kb on - strand, within QEN71_RS03820at 842.983 kb on - strand, within QEN71_RS03820at 842.983 kb on - strand, within QEN71_RS03820at 843.009 kb on + strand, within QEN71_RS03820at 843.009 kb on + strand, within QEN71_RS03820at 843.009 kb on + strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.028 kb on - strand, within QEN71_RS03820at 843.028 kb on - strand, within QEN71_RS03820at 843.064 kb on + strandat 843.065 kb on - strandat 843.065 kb on - strandat 843.065 kb on - strandat 843.065 kb on - strandat 843.072 kb on + strandat 843.072 kb on + strandat 843.073 kb on - strandat 843.073 kb on - strandat 843.073 kb on - strandat 843.266 kb on + strandat 843.266 kb on + strandat 843.392 kb on + strand, within QEN71_RS03825at 843.392 kb on + strand, within QEN71_RS03825at 843.393 kb on - strand, within QEN71_RS03825at 843.393 kb on - strand, within QEN71_RS03825at 843.403 kb on - strand, within QEN71_RS03825at 843.494 kb on + strand, within QEN71_RS03825at 843.494 kb on + strand, within QEN71_RS03825at 843.494 kb on + strand, within QEN71_RS03825at 843.495 kb on - strand, within QEN71_RS03825at 843.495 kb on - strand, within QEN71_RS03825at 843.638 kb on + strand, within QEN71_RS03825at 843.639 kb on - strand, within QEN71_RS03825at 843.639 kb on - strand, within QEN71_RS03825at 843.639 kb on - strand, within QEN71_RS03825at 843.639 kb on - strand, within QEN71_RS03825at 843.639 kb on - strand, within QEN71_RS03825at 843.878 kb on + strand, within QEN71_RS03825at 843.914 kb on + strand, within QEN71_RS03825at 843.914 kb on + strand, within QEN71_RS03825at 843.914 kb on + strand, within QEN71_RS03825at 843.915 kb on - strand, within QEN71_RS03825at 843.915 kb on - strand, within QEN71_RS03825at 843.915 kb on - strand, within QEN71_RS03825

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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841,486 + QEN71_RS03805 0.50 +0.3
841,486 + QEN71_RS03805 0.50 +0.2
841,486 + QEN71_RS03805 0.50 +1.7
841,487 - QEN71_RS03805 0.50 -0.1
841,487 - QEN71_RS03805 0.50 +0.5
841,517 + QEN71_RS03805 0.54 -0.8
841,517 + QEN71_RS03805 0.54 +1.2
841,518 - QEN71_RS03805 0.54 +0.9
841,518 - QEN71_RS03805 0.54 -0.6
841,518 - QEN71_RS03805 0.54 +1.4
841,549 + QEN71_RS03805 0.58 +0.8
841,549 + QEN71_RS03805 0.58 -0.0
841,549 + QEN71_RS03805 0.58 +2.3
841,550 - QEN71_RS03805 0.58 -0.2
841,550 - QEN71_RS03805 0.58 +1.2
841,711 + QEN71_RS03805 0.78 +0.3
841,711 + QEN71_RS03805 0.78 +1.0
841,711 + QEN71_RS03805 0.78 +0.6
841,711 + QEN71_RS03805 0.78 +2.1
841,711 + QEN71_RS03805 0.78 +0.5
841,711 + QEN71_RS03805 0.78 +0.7
841,711 + QEN71_RS03805 0.78 -0.3
841,711 + QEN71_RS03805 0.78 -0.0
841,711 + QEN71_RS03805 0.78 +0.7
841,711 + QEN71_RS03805 0.78 +0.3
841,711 + QEN71_RS03805 0.78 +2.3
841,712 - QEN71_RS03805 0.78 +1.0
841,712 - QEN71_RS03805 0.78 -0.6
841,712 - QEN71_RS03805 0.78 +0.3
841,712 - QEN71_RS03805 0.78 +1.8
841,712 - QEN71_RS03805 0.78 -1.3
841,842 + +0.7
841,842 + -0.5
841,842 + -0.2
841,842 + +0.3
841,842 + +0.5
841,842 + -1.4
841,842 + -0.0
841,842 + +0.2
841,842 + -0.3
841,842 + +0.2
841,842 + -0.6
841,842 + +0.3
841,843 - +0.3
841,843 - +2.3
841,843 - -0.6
841,843 - -0.1
841,843 - -0.8
841,843 - +0.2
841,843 - -0.0
841,843 - +0.7
841,843 - +1.0
841,864 + -1.1
841,864 + -0.8
841,864 + -0.7
841,865 - -0.2
841,865 - +0.3
842,030 + QEN71_RS03810 0.55 -3.3
842,030 + QEN71_RS03810 0.55 -1.0
842,031 - QEN71_RS03810 0.55 +1.2
842,031 - QEN71_RS03810 0.55 +0.9
842,031 - QEN71_RS03810 0.55 +0.9
842,031 - QEN71_RS03810 0.55 -0.5
842,031 - QEN71_RS03810 0.55 +2.1
842,031 - QEN71_RS03810 0.55 -1.8
842,089 + QEN71_RS03810 0.75 +1.1
842,089 + QEN71_RS03810 0.75 +0.6
842,089 + QEN71_RS03810 0.75 -0.9
842,089 + QEN71_RS03810 0.75 -1.0
842,090 - QEN71_RS03810 0.75 -0.0
842,143 + -0.6
842,551 + QEN71_RS03820 0.19 -1.4
842,551 + QEN71_RS03820 0.19 -0.1
842,551 + QEN71_RS03820 0.19 +0.0
842,552 - QEN71_RS03820 0.19 +0.4
842,569 - QEN71_RS03820 0.22 -0.2
842,687 - QEN71_RS03820 0.38 -0.3
842,734 + QEN71_RS03820 0.45 +0.5
842,734 + QEN71_RS03820 0.45 -2.1
842,735 - QEN71_RS03820 0.45 +0.3
842,735 - QEN71_RS03820 0.45 -0.5
842,735 - QEN71_RS03820 0.45 +0.3
842,784 + QEN71_RS03820 0.52 -0.1
842,784 + QEN71_RS03820 0.52 -0.2
842,784 + QEN71_RS03820 0.52 -0.2
842,784 + QEN71_RS03820 0.52 -1.4
842,784 + QEN71_RS03820 0.52 +0.3
842,784 + QEN71_RS03820 0.52 -0.2
842,785 - QEN71_RS03820 0.53 +0.7
842,785 - QEN71_RS03820 0.53 +1.0
842,785 - QEN71_RS03820 0.53 +1.6
842,785 - QEN71_RS03820 0.53 -2.6
842,785 - QEN71_RS03820 0.53 -1.0
842,970 + QEN71_RS03820 0.79 -2.1
842,982 + QEN71_RS03820 0.81 -0.7
842,982 + QEN71_RS03820 0.81 +0.1
842,983 - QEN71_RS03820 0.81 +1.6
842,983 - QEN71_RS03820 0.81 +0.1
842,983 - QEN71_RS03820 0.81 +1.6
843,009 + QEN71_RS03820 0.85 -0.0
843,009 + QEN71_RS03820 0.85 +0.3
843,009 + QEN71_RS03820 0.85 +0.6
843,010 - QEN71_RS03820 0.85 -0.8
843,010 - QEN71_RS03820 0.85 +0.3
843,010 - QEN71_RS03820 0.85 -0.2
843,010 - QEN71_RS03820 0.85 +0.3
843,027 + QEN71_RS03820 0.87 +0.3
843,027 + QEN71_RS03820 0.87 +1.9
843,027 + QEN71_RS03820 0.87 -1.3
843,027 + QEN71_RS03820 0.87 -0.5
843,028 - QEN71_RS03820 0.87 +0.3
843,028 - QEN71_RS03820 0.87 +1.7
843,064 + -0.8
843,065 - +0.5
843,065 - +1.0
843,065 - +1.2
843,065 - +0.9
843,072 + -0.4
843,072 + -0.7
843,073 - -1.4
843,073 - +0.7
843,073 - +0.6
843,266 + -1.1
843,266 + -1.0
843,392 + QEN71_RS03825 0.17 +0.7
843,392 + QEN71_RS03825 0.17 -2.0
843,393 - QEN71_RS03825 0.17 -0.4
843,393 - QEN71_RS03825 0.17 -0.8
843,403 - QEN71_RS03825 0.17 +0.3
843,494 + QEN71_RS03825 0.23 -0.6
843,494 + QEN71_RS03825 0.23 +0.4
843,494 + QEN71_RS03825 0.23 +0.7
843,495 - QEN71_RS03825 0.23 +1.0
843,495 - QEN71_RS03825 0.23 +1.2
843,638 + QEN71_RS03825 0.31 +0.5
843,639 - QEN71_RS03825 0.31 +0.1
843,639 - QEN71_RS03825 0.31 +0.4
843,639 - QEN71_RS03825 0.31 +1.1
843,639 - QEN71_RS03825 0.31 +0.9
843,639 - QEN71_RS03825 0.31 +0.6
843,878 + QEN71_RS03825 0.45 -0.2
843,914 + QEN71_RS03825 0.47 +0.3
843,914 + QEN71_RS03825 0.47 -2.1
843,914 + QEN71_RS03825 0.47 +2.6
843,915 - QEN71_RS03825 0.47 -1.2
843,915 - QEN71_RS03825 0.47 +1.4
843,915 - QEN71_RS03825 0.47 +1.1

Or see this region's nucleotide sequence