Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03540 and QEN71_RS03545 are separated by 772 nucleotides QEN71_RS03545 and QEN71_RS03550 are separated by 208 nucleotides
QEN71_RS03540: QEN71_RS03540 - lipopolysaccharide heptosyltransferase I, at 790,664 to 791,671
_RS03540
QEN71_RS03545: QEN71_RS03545 - hypothetical protein, at 792,444 to 792,623
_RS03545
QEN71_RS03550: QEN71_RS03550 - MFS transporter, at 792,832 to 794,139
_RS03550
Position (kb) 792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.533 kb on + strand, within QEN71_RS03540 at 791.533 kb on + strand, within QEN71_RS03540 at 791.533 kb on + strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.690 kb on - strand at 791.690 kb on - strand at 791.809 kb on + strand at 791.810 kb on - strand at 791.810 kb on - strand at 791.820 kb on + strand at 791.820 kb on + strand at 791.821 kb on - strand at 791.829 kb on + strand at 791.829 kb on + strand at 791.830 kb on - strand at 791.942 kb on + strand at 791.942 kb on + strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.970 kb on + strand at 791.970 kb on + strand at 791.970 kb on + strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.981 kb on + strand at 791.982 kb on - strand at 792.108 kb on + strand at 792.108 kb on + strand at 792.109 kb on - strand at 792.184 kb on - strand at 792.184 kb on - strand at 792.205 kb on + strand at 792.206 kb on - strand at 792.288 kb on + strand at 792.288 kb on + strand at 792.288 kb on + strand at 792.289 kb on - strand at 792.289 kb on - strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.365 kb on - strand at 792.365 kb on - strand at 792.365 kb on - strand at 792.365 kb on - strand at 792.390 kb on - strand at 792.404 kb on + strand at 792.404 kb on + strand at 792.404 kb on + strand at 792.405 kb on - strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.411 kb on - strand at 792.411 kb on - strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.665 kb on - strand at 792.665 kb on - strand at 792.665 kb on - strand at 792.665 kb on - strand at 792.676 kb on - strand at 792.676 kb on - strand at 792.676 kb on - strand at 792.676 kb on - strand at 792.676 kb on - strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.677 kb on + strand at 792.678 kb on - strand at 792.678 kb on - strand at 792.678 kb on - strand at 792.678 kb on - strand at 792.678 kb on - strand at 792.678 kb on - strand at 792.729 kb on + strand at 792.730 kb on - strand at 792.730 kb on - strand at 792.730 kb on - strand at 792.730 kb on - strand at 792.730 kb on - strand at 792.730 kb on - strand at 792.732 kb on + strand at 792.732 kb on + strand at 792.732 kb on + strand at 792.733 kb on - strand at 792.733 kb on - strand at 792.733 kb on - strand at 792.733 kb on - strand at 792.733 kb on - strand at 792.743 kb on + strand at 792.744 kb on - strand at 792.744 kb on - strand at 792.833 kb on + strand at 792.833 kb on + strand at 792.833 kb on + strand at 792.834 kb on - strand at 792.834 kb on - strand at 792.834 kb on - strand at 792.908 kb on + strand at 792.908 kb on + strand at 792.908 kb on + strand at 792.908 kb on + strand at 792.908 kb on + strand at 792.908 kb on + strand at 792.908 kb on + strand at 792.909 kb on - strand at 792.909 kb on - strand at 792.909 kb on - strand at 792.909 kb on - strand at 792.909 kb on - strand at 792.957 kb on + strand at 792.957 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.959 kb on + strand at 792.960 kb on - strand at 792.960 kb on - strand at 792.960 kb on - strand at 792.960 kb on - strand at 792.960 kb on - strand at 792.996 kb on + strand, within QEN71_RS03550 at 792.996 kb on + strand, within QEN71_RS03550 at 792.996 kb on + strand, within QEN71_RS03550 at 792.996 kb on + strand, within QEN71_RS03550 at 792.996 kb on + strand, within QEN71_RS03550 at 792.996 kb on + strand, within QEN71_RS03550 at 792.997 kb on - strand, within QEN71_RS03550 at 792.998 kb on + strand, within QEN71_RS03550 at 792.998 kb on + strand, within QEN71_RS03550 at 792.998 kb on + strand, within QEN71_RS03550 at 792.998 kb on + strand, within QEN71_RS03550 at 792.999 kb on - strand, within QEN71_RS03550 at 792.999 kb on - strand, within QEN71_RS03550 at 792.999 kb on - strand, within QEN71_RS03550 at 792.999 kb on - strand, within QEN71_RS03550 at 792.999 kb on - strand, within QEN71_RS03550 at 792.999 kb on - strand, within QEN71_RS03550 at 793.019 kb on + strand, within QEN71_RS03550 at 793.322 kb on + strand, within QEN71_RS03550 at 793.322 kb on + strand, within QEN71_RS03550 at 793.322 kb on + strand, within QEN71_RS03550 at 793.322 kb on + strand, within QEN71_RS03550 at 793.323 kb on - strand, within QEN71_RS03550 at 793.323 kb on - strand, within QEN71_RS03550 at 793.323 kb on - strand, within QEN71_RS03550 at 793.323 kb on - strand, within QEN71_RS03550 at 793.323 kb on - strand, within QEN71_RS03550 at 793.323 kb on - strand, within QEN71_RS03550 at 793.349 kb on + strand, within QEN71_RS03550 at 793.349 kb on + strand, within QEN71_RS03550 at 793.349 kb on + strand, within QEN71_RS03550 at 793.349 kb on + strand, within QEN71_RS03550 at 793.349 kb on + strand, within QEN71_RS03550 at 793.350 kb on - strand, within QEN71_RS03550 at 793.350 kb on - strand, within QEN71_RS03550 at 793.350 kb on - strand, within QEN71_RS03550 at 793.361 kb on + strand, within QEN71_RS03550 at 793.362 kb on - strand, within QEN71_RS03550 at 793.362 kb on - strand, within QEN71_RS03550 at 793.362 kb on - strand, within QEN71_RS03550 at 793.502 kb on + strand, within QEN71_RS03550 at 793.502 kb on + strand, within QEN71_RS03550 at 793.502 kb on + strand, within QEN71_RS03550 at 793.502 kb on + strand, within QEN71_RS03550 at 793.503 kb on - strand, within QEN71_RS03550 at 793.503 kb on - strand, within QEN71_RS03550 at 793.503 kb on - strand, within QEN71_RS03550 at 793.503 kb on - strand, within QEN71_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 791,533 + QEN71_RS03540 0.86 +1.4 791,533 + QEN71_RS03540 0.86 -0.5 791,533 + QEN71_RS03540 0.86 -1.3 791,534 - QEN71_RS03540 0.86 +0.9 791,534 - QEN71_RS03540 0.86 -0.6 791,534 - QEN71_RS03540 0.86 -1.5 791,534 - QEN71_RS03540 0.86 -0.0 791,573 + -2.2 791,573 + -0.9 791,573 + -2.2 791,573 + -1.0 791,573 + -2.2 791,573 + +0.2 791,573 + -1.0 791,573 + -0.0 791,573 + -0.6 791,574 - -2.6 791,574 - -1.1 791,574 - -0.2 791,574 - -1.4 791,574 - -0.9 791,574 - -0.4 791,574 - -3.1 791,574 - +0.3 791,574 - +0.5 791,574 - -1.4 791,574 - -0.7 791,574 - -0.2 791,574 - -0.0 791,574 - +0.1 791,574 - +0.1 791,574 - -0.6 791,682 + +0.3 791,682 + -0.0 791,682 + -1.6 791,682 + +0.1 791,682 + -0.2 791,682 + -1.5 791,690 - -0.4 791,690 - +0.8 791,809 + -1.5 791,810 - -0.5 791,810 - -0.4 791,820 + -3.2 791,820 + +0.4 791,821 - -0.1 791,829 + -0.5 791,829 + -3.2 791,830 - -0.4 791,942 + -0.0 791,942 + +1.3 791,943 - -0.3 791,943 - +2.1 791,943 - +0.1 791,943 - -1.7 791,943 - +0.3 791,943 - +0.0 791,970 + +1.5 791,970 + -1.3 791,970 + -1.0 791,971 - +0.3 791,971 - +1.3 791,971 - -1.8 791,971 - -0.1 791,971 - +0.2 791,981 + +0.5 791,982 - -0.3 792,108 + +0.5 792,108 + +0.4 792,109 - -0.6 792,184 - +0.1 792,184 - -0.1 792,205 + +0.1 792,206 - -1.2 792,288 + +1.2 792,288 + +0.4 792,288 + -0.9 792,289 - +0.1 792,289 - -2.9 792,364 + +0.3 792,364 + -0.6 792,364 + -0.3 792,364 + +0.3 792,364 + +2.7 792,365 - -0.4 792,365 - -0.8 792,365 - -0.9 792,365 - -0.5 792,390 - +0.6 792,404 + -1.0 792,404 + -0.3 792,404 + -0.2 792,405 - -0.7 792,407 + +0.1 792,407 + -0.4 792,407 + +0.2 792,407 + -2.6 792,407 + -1.3 792,407 + +0.3 792,407 + +0.1 792,407 + +0.6 792,407 + +0.4 792,407 + -0.8 792,407 + -0.7 792,407 + -0.3 792,407 + +0.2 792,407 + -1.8 792,408 - +0.4 792,408 - +1.3 792,408 - +0.7 792,408 - -0.0 792,408 - +0.2 792,408 - +0.7 792,408 - -0.2 792,408 - +1.6 792,408 - +0.4 792,408 - -0.5 792,408 - +1.2 792,408 - +2.2 792,410 + +1.0 792,410 + -2.0 792,410 + +0.2 792,410 + -1.4 792,410 + -0.0 792,411 - +0.9 792,411 - -2.8 792,664 + -1.8 792,664 + -1.0 792,664 + +0.9 792,664 + -0.5 792,664 + -0.8 792,664 + -0.1 792,665 - +0.7 792,665 - +0.4 792,665 - +1.6 792,665 - +0.9 792,676 - +0.7 792,676 - -0.0 792,676 - -0.9 792,676 - -1.0 792,676 - -0.7 792,677 + -0.5 792,677 + +2.3 792,677 + +0.1 792,677 + +0.1 792,677 + +0.9 792,677 + +1.5 792,677 + +2.0 792,677 + -0.9 792,678 - -0.8 792,678 - -0.3 792,678 - +0.9 792,678 - -0.0 792,678 - -1.6 792,678 - -0.7 792,729 + -0.9 792,730 - -0.9 792,730 - -0.7 792,730 - -0.0 792,730 - +0.7 792,730 - +0.1 792,730 - +1.4 792,732 + +2.5 792,732 + -0.0 792,732 + -0.1 792,733 - -0.5 792,733 - +0.5 792,733 - -0.3 792,733 - +1.0 792,733 - -2.0 792,743 + +2.3 792,744 - +0.6 792,744 - +0.3 792,833 + -1.7 792,833 + -0.5 792,833 + -0.0 792,834 - -1.4 792,834 - +0.3 792,834 - -0.6 792,908 + -1.0 792,908 + -1.2 792,908 + -0.4 792,908 + +0.9 792,908 + +1.5 792,908 + -0.6 792,908 + +0.4 792,909 - -0.2 792,909 - -2.6 792,909 - +0.5 792,909 - -0.5 792,909 - -0.7 792,957 + +0.8 792,957 + -1.6 792,959 + +0.4 792,959 + +0.4 792,959 + +0.7 792,959 + +1.4 792,959 + -1.1 792,959 + -0.1 792,959 + -0.6 792,959 + +0.4 792,959 + +1.1 792,959 + +0.3 792,959 + +0.2 792,959 + -0.6 792,959 + -1.0 792,960 - +0.2 792,960 - +0.6 792,960 - -3.0 792,960 - +0.2 792,960 - +0.2 792,996 + QEN71_RS03550 0.13 +0.6 792,996 + QEN71_RS03550 0.13 +0.8 792,996 + QEN71_RS03550 0.13 -1.3 792,996 + QEN71_RS03550 0.13 -0.9 792,996 + QEN71_RS03550 0.13 +0.0 792,996 + QEN71_RS03550 0.13 -0.1 792,997 - QEN71_RS03550 0.13 -0.9 792,998 + QEN71_RS03550 0.13 -0.9 792,998 + QEN71_RS03550 0.13 -1.1 792,998 + QEN71_RS03550 0.13 -0.2 792,998 + QEN71_RS03550 0.13 -0.0 792,999 - QEN71_RS03550 0.13 +1.5 792,999 - QEN71_RS03550 0.13 -1.5 792,999 - QEN71_RS03550 0.13 +0.9 792,999 - QEN71_RS03550 0.13 -0.0 792,999 - QEN71_RS03550 0.13 +0.7 792,999 - QEN71_RS03550 0.13 -2.0 793,019 + QEN71_RS03550 0.14 +0.9 793,322 + QEN71_RS03550 0.37 -0.8 793,322 + QEN71_RS03550 0.37 +0.1 793,322 + QEN71_RS03550 0.37 +0.1 793,322 + QEN71_RS03550 0.37 +0.2 793,323 - QEN71_RS03550 0.38 +0.7 793,323 - QEN71_RS03550 0.38 +0.6 793,323 - QEN71_RS03550 0.38 +0.6 793,323 - QEN71_RS03550 0.38 +1.6 793,323 - QEN71_RS03550 0.38 -0.2 793,323 - QEN71_RS03550 0.38 +0.1 793,349 + QEN71_RS03550 0.40 -1.2 793,349 + QEN71_RS03550 0.40 -0.6 793,349 + QEN71_RS03550 0.40 -0.2 793,349 + QEN71_RS03550 0.40 +0.7 793,349 + QEN71_RS03550 0.40 +0.1 793,350 - QEN71_RS03550 0.40 +0.5 793,350 - QEN71_RS03550 0.40 +0.3 793,350 - QEN71_RS03550 0.40 -0.5 793,361 + QEN71_RS03550 0.40 +0.2 793,362 - QEN71_RS03550 0.41 -0.4 793,362 - QEN71_RS03550 0.41 -0.7 793,362 - QEN71_RS03550 0.41 -0.1 793,502 + QEN71_RS03550 0.51 -0.3 793,502 + QEN71_RS03550 0.51 +0.4 793,502 + QEN71_RS03550 0.51 +0.0 793,502 + QEN71_RS03550 0.51 +1.1 793,503 - QEN71_RS03550 0.51 -0.6 793,503 - QEN71_RS03550 0.51 -1.1 793,503 - QEN71_RS03550 0.51 -0.3 793,503 - QEN71_RS03550 0.51 -0.6
Or see this region's nucleotide sequence