Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03340 and QEN71_RS03345 overlap by 11 nucleotides QEN71_RS03345 and QEN71_RS03350 are separated by 111 nucleotides QEN71_RS03350 and QEN71_RS03355 are separated by 573 nucleotides
QEN71_RS03340: QEN71_RS03340 - sugar ABC transporter permease, at 742,613 to 743,491
_RS03340
QEN71_RS03345: QEN71_RS03345 - carbohydrate ABC transporter permease, at 743,481 to 744,338
_RS03345
QEN71_RS03350: QEN71_RS03350 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 744,450 to 745,565
_RS03350
QEN71_RS03355: QEN71_RS03355 - hypothetical protein, at 746,139 to 747,503
_RS03355
Position (kb) 744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 743.456 kb on + strand at 743.456 kb on + strand at 743.456 kb on + strand at 743.456 kb on + strand at 743.456 kb on + strand at 743.457 kb on - strand at 743.489 kb on + strand at 743.489 kb on + strand at 743.489 kb on + strand at 743.490 kb on - strand at 743.517 kb on + strand at 743.544 kb on + strand at 743.544 kb on + strand at 743.545 kb on - strand at 743.562 kb on + strand at 743.562 kb on + strand at 743.562 kb on + strand at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.679 kb on - strand, within QEN71_RS03345 at 743.679 kb on - strand, within QEN71_RS03345 at 743.679 kb on - strand, within QEN71_RS03345 at 743.781 kb on + strand, within QEN71_RS03345 at 743.781 kb on + strand, within QEN71_RS03345 at 743.782 kb on - strand, within QEN71_RS03345 at 743.782 kb on - strand, within QEN71_RS03345 at 743.946 kb on + strand, within QEN71_RS03345 at 743.946 kb on + strand, within QEN71_RS03345 at 743.947 kb on - strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.986 kb on - strand, within QEN71_RS03345 at 743.986 kb on - strand, within QEN71_RS03345 at 743.986 kb on - strand, within QEN71_RS03345 at 744.203 kb on + strand, within QEN71_RS03345 at 744.203 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.279 kb on + strand at 744.280 kb on - strand at 744.280 kb on - strand at 744.297 kb on + strand at 744.336 kb on + strand at 744.337 kb on - strand at 744.337 kb on - strand at 744.388 kb on + strand at 744.409 kb on + strand at 744.409 kb on + strand at 744.410 kb on - strand at 744.426 kb on + strand at 744.427 kb on - strand at 744.427 kb on - strand at 744.435 kb on + strand at 744.435 kb on + strand at 744.435 kb on + strand at 744.436 kb on - strand at 744.477 kb on + strand at 744.477 kb on + strand at 744.477 kb on + strand at 744.477 kb on + strand at 744.478 kb on - strand at 744.478 kb on - strand at 744.486 kb on + strand at 744.486 kb on + strand at 744.575 kb on + strand, within QEN71_RS03350 at 744.575 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.950 kb on + strand, within QEN71_RS03350 at 744.950 kb on + strand, within QEN71_RS03350 at 744.950 kb on + strand, within QEN71_RS03350 at 745.018 kb on - strand, within QEN71_RS03350 at 745.018 kb on - strand, within QEN71_RS03350 at 745.116 kb on + strand, within QEN71_RS03350 at 745.116 kb on + strand, within QEN71_RS03350 at 745.117 kb on - strand, within QEN71_RS03350 at 745.117 kb on - strand, within QEN71_RS03350 at 745.117 kb on - strand, within QEN71_RS03350 at 745.151 kb on + strand, within QEN71_RS03350 at 745.184 kb on + strand, within QEN71_RS03350 at 745.184 kb on + strand, within QEN71_RS03350 at 745.185 kb on - strand, within QEN71_RS03350 at 745.185 kb on - strand, within QEN71_RS03350 at 745.263 kb on - strand, within QEN71_RS03350 at 745.263 kb on - strand, within QEN71_RS03350 at 745.263 kb on - strand, within QEN71_RS03350 at 745.346 kb on + strand, within QEN71_RS03350 at 745.362 kb on - strand, within QEN71_RS03350 at 745.382 kb on + strand, within QEN71_RS03350 at 745.404 kb on - strand, within QEN71_RS03350 at 745.415 kb on + strand, within QEN71_RS03350 at 745.415 kb on + strand, within QEN71_RS03350 at 745.416 kb on - strand, within QEN71_RS03350 at 745.475 kb on + strand at 745.476 kb on - strand at 745.496 kb on + strand at 745.496 kb on + strand at 745.496 kb on + strand at 745.497 kb on - strand at 745.497 kb on - strand at 745.497 kb on - strand at 745.520 kb on + strand at 745.563 kb on + strand at 745.570 kb on + strand at 745.570 kb on + strand at 745.571 kb on - strand at 745.571 kb on - strand at 745.694 kb on + strand at 745.695 kb on - strand at 745.695 kb on - strand at 745.707 kb on + strand at 745.726 kb on + strand at 745.726 kb on + strand at 745.828 kb on + strand at 745.848 kb on - strand at 745.848 kb on - strand at 745.859 kb on + strand at 745.860 kb on - strand at 745.862 kb on + strand at 745.934 kb on - strand at 745.934 kb on - strand at 745.934 kb on - strand at 745.934 kb on - strand at 745.934 kb on - strand at 746.020 kb on + strand at 746.020 kb on + strand at 746.020 kb on + strand at 746.020 kb on + strand at 746.020 kb on + strand at 746.020 kb on + strand at 746.021 kb on - strand at 746.021 kb on - strand at 746.021 kb on - strand at 746.033 kb on + strand at 746.034 kb on - strand at 746.034 kb on - strand at 746.039 kb on - strand at 746.072 kb on + strand at 746.072 kb on + strand at 746.072 kb on + strand at 746.073 kb on - strand at 746.075 kb on + strand at 746.076 kb on - strand at 746.076 kb on - strand at 746.148 kb on - strand at 746.148 kb on - strand at 746.148 kb on - strand at 746.148 kb on - strand at 746.148 kb on - strand at 746.148 kb on - strand at 746.163 kb on + strand at 746.163 kb on + strand at 746.163 kb on + strand at 746.163 kb on + strand at 746.164 kb on - strand at 746.164 kb on - strand at 746.164 kb on - strand at 746.164 kb on - strand at 746.164 kb on - strand at 746.201 kb on + strand at 746.225 kb on + strand at 746.226 kb on - strand at 746.226 kb on - strand at 746.226 kb on - strand at 746.249 kb on + strand at 746.250 kb on - strand at 746.250 kb on - strand at 746.266 kb on + strand at 746.266 kb on + strand at 746.266 kb on + strand at 746.267 kb on - strand at 746.267 kb on - strand at 746.294 kb on + strand, within QEN71_RS03355 at 746.294 kb on + strand, within QEN71_RS03355 at 746.295 kb on - strand, within QEN71_RS03355 at 746.295 kb on - strand, within QEN71_RS03355 at 746.295 kb on - strand, within QEN71_RS03355 at 746.299 kb on + strand, within QEN71_RS03355 at 746.394 kb on - strand, within QEN71_RS03355 at 746.394 kb on - strand, within QEN71_RS03355 at 746.394 kb on - strand, within QEN71_RS03355 at 746.394 kb on - strand, within QEN71_RS03355 at 746.410 kb on + strand, within QEN71_RS03355 at 746.428 kb on + strand, within QEN71_RS03355 at 746.428 kb on + strand, within QEN71_RS03355 at 746.428 kb on + strand, within QEN71_RS03355 at 746.428 kb on + strand, within QEN71_RS03355 at 746.429 kb on - strand, within QEN71_RS03355 at 746.429 kb on - strand, within QEN71_RS03355 at 746.429 kb on - strand, within QEN71_RS03355 at 746.464 kb on + strand, within QEN71_RS03355 at 746.465 kb on - strand, within QEN71_RS03355 at 746.498 kb on - strand, within QEN71_RS03355 at 746.498 kb on - strand, within QEN71_RS03355 at 746.506 kb on + strand, within QEN71_RS03355 at 746.507 kb on - strand, within QEN71_RS03355 at 746.509 kb on + strand, within QEN71_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 743,456 + +1.3 743,456 + +0.6 743,456 + +1.0 743,456 + +0.7 743,456 + -1.1 743,457 - -0.6 743,489 + -1.7 743,489 + -0.7 743,489 + +0.6 743,490 - -0.4 743,517 + +0.1 743,544 + +0.3 743,544 + +1.7 743,545 - +0.7 743,562 + +2.3 743,562 + +1.1 743,562 + +0.8 743,678 + QEN71_RS03345 0.23 -1.3 743,678 + QEN71_RS03345 0.23 -0.7 743,678 + QEN71_RS03345 0.23 +0.1 743,678 + QEN71_RS03345 0.23 -0.9 743,678 + QEN71_RS03345 0.23 +0.2 743,678 + QEN71_RS03345 0.23 +0.1 743,678 + QEN71_RS03345 0.23 -0.5 743,679 - QEN71_RS03345 0.23 +0.1 743,679 - QEN71_RS03345 0.23 -3.1 743,679 - QEN71_RS03345 0.23 -0.5 743,781 + QEN71_RS03345 0.35 -0.2 743,781 + QEN71_RS03345 0.35 +0.6 743,782 - QEN71_RS03345 0.35 +0.4 743,782 - QEN71_RS03345 0.35 -2.9 743,946 + QEN71_RS03345 0.54 -1.0 743,946 + QEN71_RS03345 0.54 -0.6 743,947 - QEN71_RS03345 0.54 +0.1 743,985 + QEN71_RS03345 0.59 +0.4 743,985 + QEN71_RS03345 0.59 -0.8 743,985 + QEN71_RS03345 0.59 -1.0 743,985 + QEN71_RS03345 0.59 -0.1 743,985 + QEN71_RS03345 0.59 -0.0 743,986 - QEN71_RS03345 0.59 +0.1 743,986 - QEN71_RS03345 0.59 -0.3 743,986 - QEN71_RS03345 0.59 -0.0 744,203 + QEN71_RS03345 0.84 +0.7 744,203 + QEN71_RS03345 0.84 -0.8 744,225 + QEN71_RS03345 0.87 -1.1 744,225 + QEN71_RS03345 0.87 -0.7 744,225 + QEN71_RS03345 0.87 +1.4 744,225 + QEN71_RS03345 0.87 -0.0 744,225 + QEN71_RS03345 0.87 +0.1 744,226 - QEN71_RS03345 0.87 -1.0 744,226 - QEN71_RS03345 0.87 -0.7 744,226 - QEN71_RS03345 0.87 -0.0 744,226 - QEN71_RS03345 0.87 +0.5 744,226 - QEN71_RS03345 0.87 +0.3 744,279 + -0.5 744,280 - -0.6 744,280 - +0.0 744,297 + -0.0 744,336 + -0.3 744,337 - -0.7 744,337 - +1.3 744,388 + -0.3 744,409 + -0.2 744,409 + -1.7 744,410 - -0.6 744,426 + +3.1 744,427 - -0.3 744,427 - -1.0 744,435 + +0.4 744,435 + -0.1 744,435 + +0.9 744,436 - -0.7 744,477 + +0.9 744,477 + -1.6 744,477 + -0.2 744,477 + -1.8 744,478 - -0.7 744,478 - -1.4 744,486 + -0.8 744,486 + +0.7 744,575 + QEN71_RS03350 0.11 +0.5 744,575 + QEN71_RS03350 0.11 -0.4 744,702 + QEN71_RS03350 0.23 +0.7 744,702 + QEN71_RS03350 0.23 +0.6 744,702 + QEN71_RS03350 0.23 +0.4 744,702 + QEN71_RS03350 0.23 +0.7 744,950 + QEN71_RS03350 0.45 -1.3 744,950 + QEN71_RS03350 0.45 +1.6 744,950 + QEN71_RS03350 0.45 -2.4 745,018 - QEN71_RS03350 0.51 -0.6 745,018 - QEN71_RS03350 0.51 -1.1 745,116 + QEN71_RS03350 0.60 -1.5 745,116 + QEN71_RS03350 0.60 -0.4 745,117 - QEN71_RS03350 0.60 -0.0 745,117 - QEN71_RS03350 0.60 -0.3 745,117 - QEN71_RS03350 0.60 -0.6 745,151 + QEN71_RS03350 0.63 +0.3 745,184 + QEN71_RS03350 0.66 -0.3 745,184 + QEN71_RS03350 0.66 +0.0 745,185 - QEN71_RS03350 0.66 +0.4 745,185 - QEN71_RS03350 0.66 -0.8 745,263 - QEN71_RS03350 0.73 -1.6 745,263 - QEN71_RS03350 0.73 +0.2 745,263 - QEN71_RS03350 0.73 -0.0 745,346 + QEN71_RS03350 0.80 -1.3 745,362 - QEN71_RS03350 0.82 -1.8 745,382 + QEN71_RS03350 0.84 +0.3 745,404 - QEN71_RS03350 0.85 +1.1 745,415 + QEN71_RS03350 0.86 +0.6 745,415 + QEN71_RS03350 0.86 +1.1 745,416 - QEN71_RS03350 0.87 -1.2 745,475 + -0.1 745,476 - -0.0 745,496 + +0.3 745,496 + +2.4 745,496 + +0.6 745,497 - -0.1 745,497 - +0.3 745,497 - +1.8 745,520 + +0.1 745,563 + -1.4 745,570 + -0.5 745,570 + +0.3 745,571 - -0.7 745,571 - +0.6 745,694 + -0.5 745,695 - +1.0 745,695 - -0.7 745,707 + -0.2 745,726 + -0.7 745,726 + -1.4 745,828 + +1.5 745,848 - -0.5 745,848 - +1.9 745,859 + -0.3 745,860 - +0.2 745,862 + +1.2 745,934 - -0.3 745,934 - -1.0 745,934 - -1.9 745,934 - -0.0 745,934 - +2.1 746,020 + -1.9 746,020 + -1.0 746,020 + +2.3 746,020 + -1.8 746,020 + -0.5 746,020 + -1.0 746,021 - -0.5 746,021 - +0.3 746,021 - -0.8 746,033 + +3.1 746,034 - +0.8 746,034 - +0.6 746,039 - -1.3 746,072 + +0.9 746,072 + -1.1 746,072 + -0.7 746,073 - -0.4 746,075 + -1.7 746,076 - +0.3 746,076 - +0.8 746,148 - -0.5 746,148 - +0.3 746,148 - -0.4 746,148 - -0.2 746,148 - -0.3 746,148 - +0.3 746,163 + +1.3 746,163 + -0.9 746,163 + +2.1 746,163 + -0.4 746,164 - +0.2 746,164 - -0.4 746,164 - -0.3 746,164 - +0.3 746,164 - +0.7 746,201 + +0.4 746,225 + +0.2 746,226 - +2.9 746,226 - +1.6 746,226 - -1.3 746,249 + +0.9 746,250 - -0.5 746,250 - -1.1 746,266 + -0.9 746,266 + -1.7 746,266 + +0.3 746,267 - +0.1 746,267 - -0.5 746,294 + QEN71_RS03355 0.11 -0.0 746,294 + QEN71_RS03355 0.11 -1.2 746,295 - QEN71_RS03355 0.11 -0.6 746,295 - QEN71_RS03355 0.11 -0.1 746,295 - QEN71_RS03355 0.11 +2.6 746,299 + QEN71_RS03355 0.12 +0.4 746,394 - QEN71_RS03355 0.19 -0.5 746,394 - QEN71_RS03355 0.19 -1.1 746,394 - QEN71_RS03355 0.19 -0.0 746,394 - QEN71_RS03355 0.19 -0.7 746,410 + QEN71_RS03355 0.20 -0.0 746,428 + QEN71_RS03355 0.21 +1.6 746,428 + QEN71_RS03355 0.21 -1.6 746,428 + QEN71_RS03355 0.21 -0.1 746,428 + QEN71_RS03355 0.21 +0.8 746,429 - QEN71_RS03355 0.21 +2.1 746,429 - QEN71_RS03355 0.21 +2.0 746,429 - QEN71_RS03355 0.21 -0.4 746,464 + QEN71_RS03355 0.24 -1.6 746,465 - QEN71_RS03355 0.24 +0.7 746,498 - QEN71_RS03355 0.26 -0.0 746,498 - QEN71_RS03355 0.26 +0.2 746,506 + QEN71_RS03355 0.27 -1.1 746,507 - QEN71_RS03355 0.27 +1.1 746,509 + QEN71_RS03355 0.27 -0.9
Or see this region's nucleotide sequence