Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02395

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02390 and QEN71_RS02395 are separated by 77 nucleotidesQEN71_RS02395 and QEN71_RS02400 are separated by 175 nucleotides QEN71_RS02390: QEN71_RS02390 - hydrolase, at 535,330 to 536,418 _RS02390 QEN71_RS02395: QEN71_RS02395 - nuclear transport factor 2 family protein, at 536,496 to 536,942 _RS02395 QEN71_RS02400: QEN71_RS02400 - lipopolysaccharide heptosyltransferase II, at 537,118 to 538,143 _RS02400 Position (kb) 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 535.583 kb on + strand, within QEN71_RS02390at 535.583 kb on + strand, within QEN71_RS02390at 535.584 kb on - strand, within QEN71_RS02390at 535.688 kb on + strand, within QEN71_RS02390at 535.689 kb on - strand, within QEN71_RS02390at 535.689 kb on - strand, within QEN71_RS02390at 535.745 kb on + strand, within QEN71_RS02390at 535.745 kb on + strand, within QEN71_RS02390at 535.745 kb on + strand, within QEN71_RS02390at 535.745 kb on + strand, within QEN71_RS02390at 535.745 kb on + strand, within QEN71_RS02390at 535.745 kb on + strand, within QEN71_RS02390at 535.746 kb on - strand, within QEN71_RS02390at 535.746 kb on - strand, within QEN71_RS02390at 535.746 kb on - strand, within QEN71_RS02390at 535.746 kb on - strand, within QEN71_RS02390at 535.888 kb on + strand, within QEN71_RS02390at 535.915 kb on - strand, within QEN71_RS02390at 535.915 kb on - strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.973 kb on + strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 535.974 kb on - strand, within QEN71_RS02390at 536.048 kb on + strand, within QEN71_RS02390at 536.048 kb on + strand, within QEN71_RS02390at 536.048 kb on + strand, within QEN71_RS02390at 536.049 kb on - strand, within QEN71_RS02390at 536.076 kb on - strand, within QEN71_RS02390at 536.076 kb on - strand, within QEN71_RS02390at 536.076 kb on - strand, within QEN71_RS02390at 536.304 kb on - strand, within QEN71_RS02390at 536.431 kb on - strandat 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.617 kb on + strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.618 kb on - strand, within QEN71_RS02395at 536.683 kb on + strand, within QEN71_RS02395at 536.684 kb on - strand, within QEN71_RS02395at 536.707 kb on + strand, within QEN71_RS02395at 536.707 kb on + strand, within QEN71_RS02395at 536.707 kb on + strand, within QEN71_RS02395at 536.708 kb on - strand, within QEN71_RS02395at 536.708 kb on - strand, within QEN71_RS02395at 536.708 kb on - strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.887 kb on + strand, within QEN71_RS02395at 536.888 kb on - strand, within QEN71_RS02395at 536.888 kb on - strand, within QEN71_RS02395at 536.888 kb on - strand, within QEN71_RS02395at 536.888 kb on - strand, within QEN71_RS02395at 536.890 kb on + strand, within QEN71_RS02395at 536.890 kb on + strand, within QEN71_RS02395at 536.890 kb on + strand, within QEN71_RS02395at 536.890 kb on + strand, within QEN71_RS02395at 536.992 kb on + strandat 536.993 kb on - strandat 536.993 kb on - strandat 536.993 kb on - strandat 536.993 kb on - strandat 536.993 kb on - strandat 536.993 kb on - strandat 536.993 kb on - strandat 537.157 kb on + strandat 537.158 kb on - strandat 537.158 kb on - strandat 537.158 kb on - strandat 537.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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535,583 + QEN71_RS02390 0.23 -1.0
535,583 + QEN71_RS02390 0.23 -0.3
535,584 - QEN71_RS02390 0.23 +0.6
535,688 + QEN71_RS02390 0.33 +0.7
535,689 - QEN71_RS02390 0.33 -2.1
535,689 - QEN71_RS02390 0.33 +0.3
535,745 + QEN71_RS02390 0.38 -0.0
535,745 + QEN71_RS02390 0.38 -1.6
535,745 + QEN71_RS02390 0.38 -0.6
535,745 + QEN71_RS02390 0.38 -1.6
535,745 + QEN71_RS02390 0.38 +1.2
535,745 + QEN71_RS02390 0.38 +0.3
535,746 - QEN71_RS02390 0.38 -0.7
535,746 - QEN71_RS02390 0.38 -0.0
535,746 - QEN71_RS02390 0.38 -0.2
535,746 - QEN71_RS02390 0.38 -1.2
535,888 + QEN71_RS02390 0.51 +0.5
535,915 - QEN71_RS02390 0.54 -0.5
535,915 - QEN71_RS02390 0.54 +0.4
535,973 + QEN71_RS02390 0.59 -0.0
535,973 + QEN71_RS02390 0.59 +1.4
535,973 + QEN71_RS02390 0.59 +1.7
535,973 + QEN71_RS02390 0.59 +0.7
535,973 + QEN71_RS02390 0.59 +0.6
535,973 + QEN71_RS02390 0.59 +0.4
535,973 + QEN71_RS02390 0.59 -0.6
535,973 + QEN71_RS02390 0.59 -1.0
535,973 + QEN71_RS02390 0.59 -0.8
535,973 + QEN71_RS02390 0.59 +0.0
535,973 + QEN71_RS02390 0.59 +1.0
535,973 + QEN71_RS02390 0.59 -0.6
535,973 + QEN71_RS02390 0.59 -1.3
535,973 + QEN71_RS02390 0.59 +0.4
535,973 + QEN71_RS02390 0.59 +0.2
535,974 - QEN71_RS02390 0.59 +0.5
535,974 - QEN71_RS02390 0.59 +0.3
535,974 - QEN71_RS02390 0.59 -0.0
535,974 - QEN71_RS02390 0.59 +1.4
535,974 - QEN71_RS02390 0.59 -0.5
535,974 - QEN71_RS02390 0.59 -1.7
535,974 - QEN71_RS02390 0.59 +0.3
535,974 - QEN71_RS02390 0.59 -1.2
535,974 - QEN71_RS02390 0.59 -0.0
535,974 - QEN71_RS02390 0.59 +0.3
535,974 - QEN71_RS02390 0.59 -2.3
535,974 - QEN71_RS02390 0.59 +0.9
535,974 - QEN71_RS02390 0.59 +0.4
536,048 + QEN71_RS02390 0.66 +0.1
536,048 + QEN71_RS02390 0.66 -0.3
536,048 + QEN71_RS02390 0.66 -0.1
536,049 - QEN71_RS02390 0.66 -0.5
536,076 - QEN71_RS02390 0.69 -2.4
536,076 - QEN71_RS02390 0.69 +0.2
536,076 - QEN71_RS02390 0.69 +0.3
536,304 - QEN71_RS02390 0.89 +1.0
536,431 - +1.3
536,617 + QEN71_RS02395 0.27 -0.5
536,617 + QEN71_RS02395 0.27 +0.3
536,617 + QEN71_RS02395 0.27 +0.3
536,617 + QEN71_RS02395 0.27 -0.7
536,617 + QEN71_RS02395 0.27 +0.3
536,617 + QEN71_RS02395 0.27 +0.3
536,617 + QEN71_RS02395 0.27 -0.2
536,617 + QEN71_RS02395 0.27 +1.7
536,617 + QEN71_RS02395 0.27 -2.5
536,617 + QEN71_RS02395 0.27 -1.6
536,617 + QEN71_RS02395 0.27 -1.6
536,617 + QEN71_RS02395 0.27 +3.2
536,617 + QEN71_RS02395 0.27 -0.0
536,617 + QEN71_RS02395 0.27 +0.3
536,617 + QEN71_RS02395 0.27 +0.7
536,617 + QEN71_RS02395 0.27 +0.1
536,617 + QEN71_RS02395 0.27 +0.7
536,617 + QEN71_RS02395 0.27 +1.3
536,618 - QEN71_RS02395 0.27 -2.0
536,618 - QEN71_RS02395 0.27 +0.7
536,618 - QEN71_RS02395 0.27 +1.2
536,618 - QEN71_RS02395 0.27 +1.0
536,618 - QEN71_RS02395 0.27 +0.4
536,618 - QEN71_RS02395 0.27 +0.9
536,618 - QEN71_RS02395 0.27 +1.2
536,618 - QEN71_RS02395 0.27 +0.9
536,618 - QEN71_RS02395 0.27 -3.0
536,618 - QEN71_RS02395 0.27 +1.7
536,618 - QEN71_RS02395 0.27 +0.4
536,618 - QEN71_RS02395 0.27 -0.9
536,618 - QEN71_RS02395 0.27 -0.0
536,618 - QEN71_RS02395 0.27 +0.2
536,618 - QEN71_RS02395 0.27 -2.6
536,683 + QEN71_RS02395 0.42 -0.9
536,684 - QEN71_RS02395 0.42 -0.5
536,707 + QEN71_RS02395 0.47 +0.3
536,707 + QEN71_RS02395 0.47 +0.7
536,707 + QEN71_RS02395 0.47 -0.0
536,708 - QEN71_RS02395 0.47 -1.0
536,708 - QEN71_RS02395 0.47 -0.3
536,708 - QEN71_RS02395 0.47 -0.9
536,887 + QEN71_RS02395 0.87 +1.1
536,887 + QEN71_RS02395 0.87 +0.6
536,887 + QEN71_RS02395 0.87 +0.3
536,887 + QEN71_RS02395 0.87 -0.1
536,887 + QEN71_RS02395 0.87 -0.3
536,887 + QEN71_RS02395 0.87 +0.5
536,887 + QEN71_RS02395 0.87 -0.3
536,887 + QEN71_RS02395 0.87 -0.0
536,887 + QEN71_RS02395 0.87 -0.8
536,888 - QEN71_RS02395 0.88 +0.3
536,888 - QEN71_RS02395 0.88 +1.2
536,888 - QEN71_RS02395 0.88 -1.6
536,888 - QEN71_RS02395 0.88 -0.4
536,890 + QEN71_RS02395 0.88 -1.9
536,890 + QEN71_RS02395 0.88 -0.9
536,890 + QEN71_RS02395 0.88 -0.7
536,890 + QEN71_RS02395 0.88 -1.7
536,992 + +0.3
536,993 - -0.8
536,993 - +1.7
536,993 - +0.3
536,993 - +1.2
536,993 - -1.3
536,993 - -0.2
536,993 - -0.6
537,157 + -0.7
537,158 - -1.7
537,158 - -2.2
537,158 - -0.5
537,158 - -0.9

Or see this region's nucleotide sequence