Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00295 and QEN71_RS00300 are separated by 39 nucleotides QEN71_RS00300 and QEN71_RS00305 are separated by 187 nucleotides QEN71_RS00305 and QEN71_RS00310 are separated by 341 nucleotides QEN71_RS00310 and QEN71_RS00315 are separated by 34 nucleotides
QEN71_RS00295: QEN71_RS00295 - nucleoid occlusion factor SlmA, at 62,723 to 63,406
_RS00295
QEN71_RS00300: QEN71_RS00300 - pyrimidine 5'-nucleotidase, at 63,446 to 64,201
_RS00300
QEN71_RS00305: QEN71_RS00305 - acetylglutamate kinase, at 64,389 to 65,288
_RS00305
QEN71_RS00310: QEN71_RS00310 - cysteine-rich CWC family protein, at 65,630 to 65,869
_RS00310
QEN71_RS00315: QEN71_RS00315 - hypothetical protein, at 65,904 to 67,541
_RS00315
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.447 kb on + strand at 63.495 kb on - strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.519 kb on + strand at 63.520 kb on - strand at 63.520 kb on - strand at 63.520 kb on - strand at 63.520 kb on - strand at 63.520 kb on - strand at 63.520 kb on - strand at 63.520 kb on - strand at 63.624 kb on + strand, within QEN71_RS00300 at 63.624 kb on + strand, within QEN71_RS00300 at 63.625 kb on - strand, within QEN71_RS00300 at 63.625 kb on - strand, within QEN71_RS00300 at 63.766 kb on + strand, within QEN71_RS00300 at 63.766 kb on + strand, within QEN71_RS00300 at 63.766 kb on + strand, within QEN71_RS00300 at 63.767 kb on - strand, within QEN71_RS00300 at 63.767 kb on - strand, within QEN71_RS00300 at 63.819 kb on + strand, within QEN71_RS00300 at 63.819 kb on + strand, within QEN71_RS00300 at 63.819 kb on + strand, within QEN71_RS00300 at 63.819 kb on + strand, within QEN71_RS00300 at 63.820 kb on - strand, within QEN71_RS00300 at 63.820 kb on - strand, within QEN71_RS00300 at 63.820 kb on - strand, within QEN71_RS00300 at 63.850 kb on + strand, within QEN71_RS00300 at 63.850 kb on + strand, within QEN71_RS00300 at 63.933 kb on + strand, within QEN71_RS00300 at 63.933 kb on + strand, within QEN71_RS00300 at 63.933 kb on + strand, within QEN71_RS00300 at 63.934 kb on - strand, within QEN71_RS00300 at 63.934 kb on - strand, within QEN71_RS00300 at 63.934 kb on - strand, within QEN71_RS00300 at 63.934 kb on - strand, within QEN71_RS00300 at 63.934 kb on - strand, within QEN71_RS00300 at 63.934 kb on - strand, within QEN71_RS00300 at 64.009 kb on - strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.065 kb on + strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.066 kb on - strand, within QEN71_RS00300 at 64.319 kb on + strand at 64.319 kb on + strand at 64.319 kb on + strand at 64.319 kb on + strand at 64.319 kb on + strand at 64.320 kb on - strand at 64.320 kb on - strand at 64.320 kb on - strand at 64.320 kb on - strand at 64.320 kb on - strand at 64.377 kb on - strand at 64.383 kb on - strand at 64.383 kb on - strand at 64.383 kb on - strand at 64.383 kb on - strand at 65.216 kb on - strand at 65.332 kb on + strand at 65.333 kb on - strand at 65.353 kb on + strand at 65.353 kb on + strand at 65.353 kb on + strand at 65.354 kb on - strand at 65.354 kb on - strand at 65.471 kb on + strand at 65.471 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.524 kb on + strand at 65.524 kb on + strand at 65.525 kb on - strand at 65.548 kb on - strand at 65.905 kb on + strand at 65.905 kb on + strand at 65.906 kb on - strand at 65.906 kb on - strand at 65.993 kb on - strand at 66.010 kb on + strand at 66.011 kb on - strand at 66.125 kb on + strand, within QEN71_RS00315 at 66.126 kb on - strand, within QEN71_RS00315 at 66.126 kb on - strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.200 kb on + strand, within QEN71_RS00315 at 66.201 kb on - strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 63,447 + +0.4 63,495 - -2.9 63,519 + +0.6 63,519 + +0.2 63,519 + -0.8 63,519 + +0.0 63,519 + -0.7 63,519 + -0.6 63,519 + -0.2 63,519 + -0.7 63,519 + -0.6 63,520 - -0.3 63,520 - -0.4 63,520 - -1.3 63,520 - -0.2 63,520 - +0.2 63,520 - +0.6 63,520 - +0.1 63,624 + QEN71_RS00300 0.24 -0.2 63,624 + QEN71_RS00300 0.24 -0.9 63,625 - QEN71_RS00300 0.24 -0.0 63,625 - QEN71_RS00300 0.24 +0.4 63,766 + QEN71_RS00300 0.42 +1.2 63,766 + QEN71_RS00300 0.42 +0.5 63,766 + QEN71_RS00300 0.42 -1.4 63,767 - QEN71_RS00300 0.42 -0.2 63,767 - QEN71_RS00300 0.42 -1.4 63,819 + QEN71_RS00300 0.49 -0.9 63,819 + QEN71_RS00300 0.49 +1.1 63,819 + QEN71_RS00300 0.49 +0.3 63,819 + QEN71_RS00300 0.49 +0.4 63,820 - QEN71_RS00300 0.49 +0.2 63,820 - QEN71_RS00300 0.49 -0.4 63,820 - QEN71_RS00300 0.49 +1.2 63,850 + QEN71_RS00300 0.53 +0.5 63,850 + QEN71_RS00300 0.53 -0.9 63,933 + QEN71_RS00300 0.64 -0.4 63,933 + QEN71_RS00300 0.64 -0.8 63,933 + QEN71_RS00300 0.64 +0.1 63,934 - QEN71_RS00300 0.65 +0.2 63,934 - QEN71_RS00300 0.65 +0.2 63,934 - QEN71_RS00300 0.65 -1.5 63,934 - QEN71_RS00300 0.65 -0.1 63,934 - QEN71_RS00300 0.65 +0.2 63,934 - QEN71_RS00300 0.65 +0.5 64,009 - QEN71_RS00300 0.74 -2.1 64,065 + QEN71_RS00300 0.82 -0.3 64,065 + QEN71_RS00300 0.82 -1.2 64,065 + QEN71_RS00300 0.82 -0.6 64,065 + QEN71_RS00300 0.82 +0.4 64,065 + QEN71_RS00300 0.82 -0.6 64,065 + QEN71_RS00300 0.82 -0.3 64,065 + QEN71_RS00300 0.82 +0.4 64,065 + QEN71_RS00300 0.82 -0.1 64,065 + QEN71_RS00300 0.82 +0.4 64,065 + QEN71_RS00300 0.82 -1.5 64,065 + QEN71_RS00300 0.82 +0.4 64,066 - QEN71_RS00300 0.82 -0.5 64,066 - QEN71_RS00300 0.82 -0.6 64,066 - QEN71_RS00300 0.82 +0.7 64,066 - QEN71_RS00300 0.82 -0.7 64,066 - QEN71_RS00300 0.82 -1.3 64,066 - QEN71_RS00300 0.82 +0.5 64,066 - QEN71_RS00300 0.82 -0.2 64,066 - QEN71_RS00300 0.82 -0.3 64,066 - QEN71_RS00300 0.82 +0.3 64,066 - QEN71_RS00300 0.82 +1.8 64,066 - QEN71_RS00300 0.82 +0.5 64,319 + +1.2 64,319 + -0.8 64,319 + -1.3 64,319 + +0.0 64,319 + -0.0 64,320 - +0.3 64,320 - +0.3 64,320 - -0.5 64,320 - -0.3 64,320 - -0.7 64,377 - -0.3 64,383 - +0.6 64,383 - +0.3 64,383 - -0.2 64,383 - -1.5 65,216 - -0.4 65,332 + +1.2 65,333 - -0.5 65,353 + -0.4 65,353 + +0.4 65,353 + +1.0 65,354 - +0.8 65,354 - +0.4 65,471 + +0.5 65,471 + +0.5 65,495 + -1.0 65,495 + -1.3 65,495 + -0.8 65,495 + +0.3 65,495 + +0.8 65,495 + +0.8 65,495 + -0.7 65,495 + +0.7 65,495 + -0.8 65,496 - -0.6 65,496 - -0.5 65,496 - +0.1 65,496 - -0.3 65,496 - +0.2 65,496 - -1.5 65,496 - +0.1 65,496 - +0.1 65,524 + +1.4 65,524 + -0.4 65,525 - -1.2 65,548 - +0.4 65,905 + +0.0 65,905 + +0.2 65,906 - -0.6 65,906 - -1.1 65,993 - -0.8 66,010 + +0.4 66,011 - -0.2 66,125 + QEN71_RS00315 0.13 -0.1 66,126 - QEN71_RS00315 0.14 -2.1 66,126 - QEN71_RS00315 0.14 -0.3 66,151 + QEN71_RS00315 0.15 -0.1 66,151 + QEN71_RS00315 0.15 -0.7 66,151 + QEN71_RS00315 0.15 +1.3 66,151 + QEN71_RS00315 0.15 -0.8 66,151 + QEN71_RS00315 0.15 -0.9 66,151 + QEN71_RS00315 0.15 -0.7 66,152 - QEN71_RS00315 0.15 -0.1 66,152 - QEN71_RS00315 0.15 -2.2 66,152 - QEN71_RS00315 0.15 -0.6 66,152 - QEN71_RS00315 0.15 -0.8 66,152 - QEN71_RS00315 0.15 +0.4 66,200 + QEN71_RS00315 0.18 -1.5 66,201 - QEN71_RS00315 0.18 -0.3 66,259 + QEN71_RS00315 0.22 -0.0 66,259 + QEN71_RS00315 0.22 +0.2 66,259 + QEN71_RS00315 0.22 +0.9 66,259 + QEN71_RS00315 0.22 -1.2 66,260 - QEN71_RS00315 0.22 -0.0 66,260 - QEN71_RS00315 0.22 -0.7 66,260 - QEN71_RS00315 0.22 -1.7 66,260 - QEN71_RS00315 0.22 -1.0
Or see this region's nucleotide sequence