Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00150 and QEN71_RS00155 are separated by 255 nucleotides QEN71_RS00155 and QEN71_RS00160 are separated by 23 nucleotides
QEN71_RS00150: QEN71_RS00150 - DNA-processing protein DprA, at 31,938 to 33,113
_RS00150
QEN71_RS00155: QEN71_RS00155 - peptide deformylase, at 33,369 to 33,872
_RS00155
QEN71_RS00160: QEN71_RS00160 - methionyl-tRNA formyltransferase, at 33,896 to 34,879
_RS00160
Position (kb) 33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.412 kb on + strand, within QEN71_RS00150 at 32.412 kb on + strand, within QEN71_RS00150 at 32.412 kb on + strand, within QEN71_RS00150 at 32.412 kb on + strand, within QEN71_RS00150 at 32.412 kb on + strand, within QEN71_RS00150 at 32.413 kb on - strand, within QEN71_RS00150 at 32.413 kb on - strand, within QEN71_RS00150 at 32.413 kb on - strand, within QEN71_RS00150 at 32.413 kb on - strand, within QEN71_RS00150 at 32.478 kb on - strand, within QEN71_RS00150 at 32.551 kb on + strand, within QEN71_RS00150 at 32.739 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.781 kb on + strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.782 kb on - strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.785 kb on + strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.786 kb on - strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.787 kb on + strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.788 kb on - strand, within QEN71_RS00150 at 32.831 kb on - strand, within QEN71_RS00150 at 32.944 kb on - strand, within QEN71_RS00150 at 33.272 kb on + strand at 33.272 kb on + strand at 33.272 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.276 kb on + strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.277 kb on - strand at 33.368 kb on + strand at 33.368 kb on + strand at 33.368 kb on + strand at 33.368 kb on + strand at 33.368 kb on + strand at 33.368 kb on + strand at 33.368 kb on + strand at 33.808 kb on - strand, within QEN71_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 32,412 + QEN71_RS00150 0.40 +0.0 32,412 + QEN71_RS00150 0.40 +0.2 32,412 + QEN71_RS00150 0.40 -0.4 32,412 + QEN71_RS00150 0.40 -1.1 32,412 + QEN71_RS00150 0.40 -0.6 32,413 - QEN71_RS00150 0.40 +0.6 32,413 - QEN71_RS00150 0.40 +0.8 32,413 - QEN71_RS00150 0.40 +0.3 32,413 - QEN71_RS00150 0.40 -1.8 32,478 - QEN71_RS00150 0.46 -0.3 32,551 + QEN71_RS00150 0.52 -1.4 32,739 + QEN71_RS00150 0.68 +0.5 32,781 + QEN71_RS00150 0.72 +0.2 32,781 + QEN71_RS00150 0.72 +0.4 32,781 + QEN71_RS00150 0.72 -0.1 32,781 + QEN71_RS00150 0.72 -0.6 32,781 + QEN71_RS00150 0.72 -0.4 32,781 + QEN71_RS00150 0.72 -1.3 32,781 + QEN71_RS00150 0.72 +0.2 32,781 + QEN71_RS00150 0.72 -0.2 32,781 + QEN71_RS00150 0.72 +1.0 32,781 + QEN71_RS00150 0.72 +0.2 32,781 + QEN71_RS00150 0.72 -0.7 32,781 + QEN71_RS00150 0.72 -1.3 32,781 + QEN71_RS00150 0.72 -0.3 32,781 + QEN71_RS00150 0.72 +1.6 32,781 + QEN71_RS00150 0.72 +0.8 32,781 + QEN71_RS00150 0.72 -1.3 32,781 + QEN71_RS00150 0.72 -0.7 32,781 + QEN71_RS00150 0.72 +0.8 32,781 + QEN71_RS00150 0.72 -0.5 32,782 - QEN71_RS00150 0.72 -0.5 32,782 - QEN71_RS00150 0.72 -0.7 32,782 - QEN71_RS00150 0.72 -2.2 32,782 - QEN71_RS00150 0.72 -0.4 32,782 - QEN71_RS00150 0.72 -0.2 32,782 - QEN71_RS00150 0.72 +0.7 32,782 - QEN71_RS00150 0.72 -1.1 32,782 - QEN71_RS00150 0.72 -0.2 32,782 - QEN71_RS00150 0.72 +0.1 32,782 - QEN71_RS00150 0.72 +0.2 32,782 - QEN71_RS00150 0.72 +0.5 32,782 - QEN71_RS00150 0.72 -0.2 32,782 - QEN71_RS00150 0.72 +0.3 32,782 - QEN71_RS00150 0.72 -0.4 32,782 - QEN71_RS00150 0.72 +2.0 32,782 - QEN71_RS00150 0.72 -0.4 32,782 - QEN71_RS00150 0.72 +0.2 32,782 - QEN71_RS00150 0.72 -0.1 32,785 + QEN71_RS00150 0.72 -0.4 32,785 + QEN71_RS00150 0.72 +0.5 32,785 + QEN71_RS00150 0.72 -0.9 32,785 + QEN71_RS00150 0.72 -0.2 32,785 + QEN71_RS00150 0.72 +0.9 32,785 + QEN71_RS00150 0.72 -0.3 32,785 + QEN71_RS00150 0.72 +2.9 32,785 + QEN71_RS00150 0.72 -0.9 32,785 + QEN71_RS00150 0.72 +0.2 32,785 + QEN71_RS00150 0.72 +0.4 32,785 + QEN71_RS00150 0.72 -0.9 32,785 + QEN71_RS00150 0.72 -0.4 32,785 + QEN71_RS00150 0.72 -0.3 32,785 + QEN71_RS00150 0.72 -0.3 32,785 + QEN71_RS00150 0.72 -2.2 32,785 + QEN71_RS00150 0.72 +0.6 32,785 + QEN71_RS00150 0.72 -0.6 32,785 + QEN71_RS00150 0.72 +0.4 32,785 + QEN71_RS00150 0.72 -1.0 32,785 + QEN71_RS00150 0.72 -0.5 32,786 - QEN71_RS00150 0.72 -0.8 32,786 - QEN71_RS00150 0.72 +0.4 32,786 - QEN71_RS00150 0.72 +0.2 32,786 - QEN71_RS00150 0.72 -0.1 32,786 - QEN71_RS00150 0.72 -0.3 32,786 - QEN71_RS00150 0.72 +0.2 32,786 - QEN71_RS00150 0.72 -0.2 32,786 - QEN71_RS00150 0.72 -0.4 32,786 - QEN71_RS00150 0.72 +0.3 32,786 - QEN71_RS00150 0.72 -0.2 32,786 - QEN71_RS00150 0.72 +0.9 32,786 - QEN71_RS00150 0.72 -0.0 32,786 - QEN71_RS00150 0.72 +0.1 32,786 - QEN71_RS00150 0.72 +0.5 32,786 - QEN71_RS00150 0.72 +0.3 32,787 + QEN71_RS00150 0.72 +1.5 32,787 + QEN71_RS00150 0.72 +0.8 32,787 + QEN71_RS00150 0.72 -0.6 32,787 + QEN71_RS00150 0.72 -1.4 32,787 + QEN71_RS00150 0.72 -0.2 32,787 + QEN71_RS00150 0.72 -1.4 32,787 + QEN71_RS00150 0.72 -0.5 32,787 + QEN71_RS00150 0.72 -2.1 32,787 + QEN71_RS00150 0.72 +0.1 32,787 + QEN71_RS00150 0.72 +0.4 32,787 + QEN71_RS00150 0.72 -1.4 32,787 + QEN71_RS00150 0.72 -0.0 32,787 + QEN71_RS00150 0.72 -0.9 32,787 + QEN71_RS00150 0.72 -0.1 32,787 + QEN71_RS00150 0.72 +1.2 32,787 + QEN71_RS00150 0.72 -1.1 32,788 - QEN71_RS00150 0.72 +0.5 32,788 - QEN71_RS00150 0.72 -0.5 32,788 - QEN71_RS00150 0.72 -0.0 32,788 - QEN71_RS00150 0.72 +0.2 32,788 - QEN71_RS00150 0.72 +1.7 32,788 - QEN71_RS00150 0.72 -0.1 32,788 - QEN71_RS00150 0.72 -1.3 32,788 - QEN71_RS00150 0.72 +2.2 32,788 - QEN71_RS00150 0.72 +0.2 32,788 - QEN71_RS00150 0.72 -1.0 32,788 - QEN71_RS00150 0.72 +0.6 32,788 - QEN71_RS00150 0.72 -0.4 32,831 - QEN71_RS00150 0.76 -0.6 32,944 - QEN71_RS00150 0.86 +0.2 33,272 + +0.7 33,272 + -0.9 33,272 + +0.4 33,276 + -0.7 33,276 + +0.2 33,276 + -1.2 33,276 + -0.5 33,276 + +2.5 33,276 + -0.8 33,276 + -1.3 33,276 + -0.2 33,276 + +0.4 33,276 + -1.4 33,276 + -0.1 33,276 + -2.9 33,276 + +2.2 33,276 + -0.1 33,276 + -0.6 33,277 - -0.2 33,277 - -0.0 33,277 - +0.7 33,277 - -0.3 33,277 - -0.6 33,277 - -2.3 33,277 - +0.6 33,277 - +1.7 33,277 - -0.8 33,277 - -1.3 33,277 - -0.1 33,277 - -1.3 33,277 - -1.7 33,277 - -2.4 33,277 - +0.6 33,277 - +0.6 33,277 - +2.2 33,277 - +0.2 33,277 - +1.4 33,277 - +0.2 33,277 - -1.2 33,277 - +1.1 33,277 - +1.4 33,277 - -0.5 33,277 - +1.0 33,368 + +0.9 33,368 + -1.2 33,368 + -0.6 33,368 + +0.2 33,368 + -0.1 33,368 + +0.6 33,368 + -1.3 33,808 - QEN71_RS00155 0.87 -0.4
Or see this region's nucleotide sequence