Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04141

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
5,901	+		MIT1002_04140	0.86	+0.5
5,929	+		MIT1002_04140	0.89	+0.3
5,942	-		MIT1002_04140	0.90	+0.2
5,947	-				+0.4
5,948	+				-0.3
5,973	+				+0.5
5,979	-				+0.0
5,981	-				-2.0
5,992	+				+1.0
5,992	+				+0.7
6,061	-				+0.2
6,075	+				-0.2
6,075	+				-0.9
6,083	-				-0.6
6,083	-				-1.6
6,083	-				-0.1
6,085	+				+0.7
6,090	+				+0.5
6,090	+				+0.0
6,090	+				-0.2
6,090	+				+1.4
6,090	+				-0.5
6,090	+				-0.7
6,090	+				-0.5
6,090	+				-0.8
6,090	+				+0.4
6,090	+				+1.2
6,090	+				+0.6
6,098	-				-0.2
6,098	-				+0.5
6,098	-				+0.3
6,098	-				+0.0
6,148	-				+0.8
6,148	-				-0.9
6,201	+				-1.7
6,209	-				+1.2
6,231	+				-0.0
6,239	-				+0.3
6,266	-				+0.6
6,270	+				+0.0
6,337	-				+0.8
6,352	-				-1.1
6,357	-				+0.4
6,398	+				-0.9
6,398	+				-0.2
6,398	+				+0.0
6,406	-				-0.3
6,406	-				-0.5
6,406	-				+0.7
6,406	-				+0.1
6,406	-				+0.1
6,422	-				+0.5
6,423	+				+0.6
6,721	+				-0.1
6,780	-				-1.4
6,780	-				-0.7
6,819	+				-2.4
6,910	+				+0.4
6,918	-				-0.1
6,930	+				+0.7
6,975	-		MIT1002_04141	0.13	+0.3
7,008	-		MIT1002_04141	0.18	-0.0
7,015	+		MIT1002_04141	0.19	-2.0
7,015	+		MIT1002_04141	0.19	-0.8
7,016	+		MIT1002_04141	0.20	+0.0
7,070	-		MIT1002_04141	0.28	-1.0
7,100	+		MIT1002_04141	0.33	+1.1
7,102	-		MIT1002_04141	0.33	-1.6
7,102	-		MIT1002_04141	0.33	-0.5
7,103	-		MIT1002_04141	0.33	-0.4
7,186	+		MIT1002_04141	0.46	+1.2
7,231	-		MIT1002_04141	0.53	-0.4
7,231	-		MIT1002_04141	0.53	+1.1
7,256	+		MIT1002_04141	0.57	-0.8
7,262	-		MIT1002_04141	0.58	-0.3
7,288	-		MIT1002_04141	0.62	-0.9
7,331	-		MIT1002_04141	0.69	-0.2
7,422	+		MIT1002_04141	0.83	-1.2
7,473	+				-0.8
7,534	-				+0.2
7,639	-		MIT1002_04142	0.42	+0.0
7,725	+		MIT1002_04142	0.75	+0.3
7,727	+		MIT1002_04142	0.76	+0.1
7,733	-		MIT1002_04142	0.78	+1.3
7,733	-		MIT1002_04142	0.78	+0.1
7,735	-		MIT1002_04142	0.79	-0.9
7,745	+		MIT1002_04142	0.83	+0.4
7,745	+		MIT1002_04142	0.83	+0.3
7,745	+		MIT1002_04142	0.83	-0.2
7,753	-		MIT1002_04142	0.86	-0.5
7,753	-		MIT1002_04142	0.86	-0.4
7,753	-		MIT1002_04142	0.86	+0.1
7,753	-		MIT1002_04142	0.86	-1.6
7,771	-				-2.5
7,775	+				+0.1
7,892	-				-0.3
7,905	+				+0.8
7,905	+				+0.0
7,905	+				-0.9
7,906	-				-0.7
7,913	-				+0.8
7,913	-				-1.9
7,913	-				+0.7
7,913	-				+0.4
7,913	-				+0.2
7,929	-				+0.5
7,964	+				-3.2
7,964	+				+0.4
7,976	+				+0.8
7,976	+				-0.6
8,013	-				+0.1
8,037	+				+0.7
8,067	-				+0.1
8,071	+				-0.2
8,071	+				-1.0
8,095	+				+0.0
8,114	+				-0.4
8,137	+		MIT1002_04143	0.11	+0.1
8,183	-		MIT1002_04143	0.16	-0.0
8,222	+		MIT1002_04143	0.20	-2.4
8,223	-		MIT1002_04143	0.20	+1.1
8,228	-		MIT1002_04143	0.21	+0.5
8,240	+		MIT1002_04143	0.22	+0.1
8,270	+		MIT1002_04143	0.25	+0.7
8,280	+		MIT1002_04143	0.26	+2.0
8,288	-		MIT1002_04143	0.27	+1.0
8,295	-		MIT1002_04143	0.28	-0.2
8,313	+		MIT1002_04143	0.30	+0.1
8,360	+		MIT1002_04143	0.35	+0.7
8,360	+		MIT1002_04143	0.35	+0.0
8,368	-		MIT1002_04143	0.36	-0.2
8,422	+		MIT1002_04143	0.41	-0.1
8,422	+		MIT1002_04143	0.41	-1.6
8,430	-		MIT1002_04143	0.42	+0.1
8,430	-		MIT1002_04143	0.42	-0.2
8,440	+		MIT1002_04143	0.43	+0.6