Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03971

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
4,454,713	-		MIT1002_03970	0.30	-0.0
4,454,762	+		MIT1002_03970	0.34	-1.5
4,454,770	-		MIT1002_03970	0.34	+0.7
4,454,892	-		MIT1002_03970	0.45	+0.1
4,454,931	-		MIT1002_03970	0.48	+0.5
4,454,931	-		MIT1002_03970	0.48	+2.7
4,454,973	+		MIT1002_03970	0.52	-0.8
4,455,047	+		MIT1002_03970	0.58	+0.6
4,455,055	-		MIT1002_03970	0.59	+0.4
4,455,089	-		MIT1002_03970	0.62	+0.2
4,455,091	-		MIT1002_03970	0.62	-0.4
4,455,091	-		MIT1002_03970	0.62	+0.0
4,455,099	-		MIT1002_03970	0.62	-0.6
4,455,131	+		MIT1002_03970	0.65	+0.4
4,455,229	-		MIT1002_03970	0.74	+0.6
4,455,230	+		MIT1002_03970	0.74	+0.9
4,455,276	+		MIT1002_03970	0.78	+2.5
4,455,276	+		MIT1002_03970	0.78	+0.7
4,455,279	-		MIT1002_03970	0.78	+1.7
4,455,282	+		MIT1002_03970	0.78	-1.6
4,455,328	+		MIT1002_03970	0.82	+1.8
4,455,377	+		MIT1002_03970	0.86	+0.4
4,455,377	+		MIT1002_03970	0.86	-0.1
4,455,419	-		MIT1002_03970	0.90	+0.1
4,455,421	+				-0.3
4,455,421	-				+0.1
4,455,429	-				-1.9
4,455,552	-				-2.1
4,455,585	+				+0.3
4,455,588	+				+0.8
4,455,600	+				-0.3
4,455,641	+				-0.7
4,455,641	+				-1.4
4,455,641	+				-1.0
4,455,643	+				-0.2
4,455,643	+				-0.3
4,455,643	+				+0.0
4,455,643	+				-0.6
4,455,649	-				-1.4
4,455,649	-				-0.7
4,455,649	-				+1.0
4,455,649	-				-0.5
4,455,649	-				+0.4
4,455,820	-				+0.2
4,455,841	+				-0.7
4,455,883	+				+0.3
4,455,891	-				+3.9
4,456,046	+		MIT1002_03971	0.15	-0.2
4,456,066	+		MIT1002_03971	0.16	-0.1
4,456,076	-		MIT1002_03971	0.16	-0.3
4,456,096	+		MIT1002_03971	0.17	-0.5
4,456,152	+		MIT1002_03971	0.19	-0.2
4,456,152	+		MIT1002_03971	0.19	-0.1
4,456,192	-		MIT1002_03971	0.21	-0.0
4,456,230	-		MIT1002_03971	0.23	+0.8
4,456,252	-		MIT1002_03971	0.24	-0.5
4,456,272	-		MIT1002_03971	0.24	-2.8
4,456,407	-		MIT1002_03971	0.30	+1.8
4,456,458	+		MIT1002_03971	0.32	+0.2
4,456,466	-		MIT1002_03971	0.32	-0.0
4,456,476	+		MIT1002_03971	0.33	+0.3
4,456,478	+		MIT1002_03971	0.33	-0.7
4,456,484	-		MIT1002_03971	0.33	+1.1
4,456,574	+		MIT1002_03971	0.37	-1.3
4,456,582	-		MIT1002_03971	0.37	-1.6
4,456,583	-		MIT1002_03971	0.37	+0.9
4,456,624	+		MIT1002_03971	0.39	-0.8
4,456,674	-		MIT1002_03971	0.41	-0.1
4,456,686	-		MIT1002_03971	0.42	+0.4
4,456,711	+		MIT1002_03971	0.43	-0.3
4,456,714	-		MIT1002_03971	0.43	+0.0
4,456,714	-		MIT1002_03971	0.43	-2.1
4,456,719	-		MIT1002_03971	0.43	+0.4
4,456,719	-		MIT1002_03971	0.43	-0.3
4,456,739	-		MIT1002_03971	0.44	+0.7
4,456,739	-		MIT1002_03971	0.44	-2.0
4,456,741	+		MIT1002_03971	0.44	-1.3
4,456,777	-		MIT1002_03971	0.45	+0.5
4,456,795	+		MIT1002_03971	0.46	-0.6
4,456,798	-		MIT1002_03971	0.46	-0.2
4,456,803	-		MIT1002_03971	0.46	-0.3
4,456,803	-		MIT1002_03971	0.46	+1.0
4,456,803	-		MIT1002_03971	0.46	+0.9
4,456,803	-		MIT1002_03971	0.46	-0.5
4,456,803	-		MIT1002_03971	0.46	+1.1
4,456,860	-		MIT1002_03971	0.49	-2.3
4,456,884	+		MIT1002_03971	0.50	+0.6
4,456,892	-		MIT1002_03971	0.50	+0.6
4,456,941	+		MIT1002_03971	0.52	-0.8
4,456,941	+		MIT1002_03971	0.52	+0.2
4,456,949	-		MIT1002_03971	0.52	-0.2
4,456,959	-		MIT1002_03971	0.53	+0.2
4,457,020	+		MIT1002_03971	0.55	-0.2
4,457,028	-		MIT1002_03971	0.56	-0.0
4,457,028	-		MIT1002_03971	0.56	-2.1
4,457,030	-		MIT1002_03971	0.56	-0.6
4,457,082	-		MIT1002_03971	0.58	-0.2
4,457,099	-		MIT1002_03971	0.59	+1.1
4,457,178	+		MIT1002_03971	0.62	+0.6
4,457,249	-		MIT1002_03971	0.65	-0.7
4,457,356	+		MIT1002_03971	0.69	-1.2
4,457,364	-		MIT1002_03971	0.69	-0.3
4,457,525	+		MIT1002_03971	0.76	-1.3
4,457,558	+		MIT1002_03971	0.77	+0.7
4,457,558	+		MIT1002_03971	0.77	-0.7
4,457,566	-		MIT1002_03971	0.78	+0.4
4,457,601	-		MIT1002_03971	0.79	+1.0
4,457,602	-		MIT1002_03971	0.79	-2.8
4,457,607	-		MIT1002_03971	0.79	+0.2
4,457,609	+		MIT1002_03971	0.80	+0.5
4,457,724	+		MIT1002_03971	0.84	+0.7
4,457,745	+		MIT1002_03971	0.85	-2.7
4,457,901	-				+0.1
4,457,903	+				-1.9
4,457,911	-				+0.6
4,457,990	+				+0.2
4,458,165	+				+0.7
4,458,165	-				+0.0
4,458,302	+				-0.7
4,458,307	+				-1.1
4,458,317	+				-1.4
4,458,338	+				+0.1
4,458,381	+				-1.3
4,458,483	-		MIT1002_03972	0.10	+0.2
4,458,492	+		MIT1002_03972	0.11	-0.6
4,458,573	+		MIT1002_03972	0.16	-0.2
4,458,663	-		MIT1002_03972	0.22	-0.7
4,458,673	-		MIT1002_03972	0.22	-1.3
4,458,714	-		MIT1002_03972	0.25	+0.1
4,458,725	-		MIT1002_03972	0.26	+1.2
4,458,796	-		MIT1002_03972	0.30	-0.4
4,458,796	-		MIT1002_03972	0.30	-0.5
4,458,827	-		MIT1002_03972	0.32	-2.4
4,458,955	+		MIT1002_03972	0.40	+0.0
4,458,958	-		MIT1002_03972	0.41	+0.5
4,458,981	+		MIT1002_03972	0.42	-0.1
4,458,989	-		MIT1002_03972	0.43	-0.1
4,459,025	+		MIT1002_03972	0.45	+0.4