Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03969

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
4,452,052	+				-1.1
4,452,052	+				+0.2
4,452,052	+				-0.3
4,452,217	+				+1.0
4,452,217	+				+1.8
4,452,225	-				+1.6
4,452,225	-				+1.9
4,452,225	-				+0.1
4,452,225	-				+2.2
4,452,245	+		MIT1002_03968	0.11	+1.8
4,452,247	+		MIT1002_03968	0.12	+2.1
4,452,253	-		MIT1002_03968	0.13	+1.6
4,452,255	-		MIT1002_03968	0.13	+2.5
4,452,297	-		MIT1002_03968	0.19	+1.3
4,452,321	+		MIT1002_03968	0.22	+1.9
4,452,342	+		MIT1002_03968	0.25	+1.6
4,452,372	-		MIT1002_03968	0.29	+2.4
4,452,400	+		MIT1002_03968	0.33	+1.3
4,452,481	+		MIT1002_03968	0.44	+2.0
4,452,557	+		MIT1002_03968	0.55	+1.0
4,452,565	-		MIT1002_03968	0.56	+2.1
4,452,636	+		MIT1002_03968	0.66	-0.3
4,452,636	+		MIT1002_03968	0.66	+2.5
4,452,636	+		MIT1002_03968	0.66	+1.5
4,452,636	-		MIT1002_03968	0.66	+1.8
4,452,644	-		MIT1002_03968	0.67	+2.0
4,452,644	-		MIT1002_03968	0.67	+1.4
4,452,644	-		MIT1002_03968	0.67	+2.0
4,452,717	+		MIT1002_03968	0.77	+2.0
4,452,759	-		MIT1002_03968	0.83	+1.2
4,452,759	-		MIT1002_03968	0.83	+2.5
4,452,763	+		MIT1002_03968	0.83	-0.9
4,452,837	+				+2.0
4,452,843	+				+4.3
4,452,843	+				+1.9
4,452,843	+				+1.5
4,452,843	-				+1.6
4,452,856	-				+1.5
4,452,879	+				+0.2
4,452,887	+				+0.5
4,452,895	-				+1.5
4,452,909	+				-1.2
4,452,909	+				+0.4
4,452,914	+				-0.7
4,452,922	-				+1.6
4,452,922	-				+2.4
4,452,988	+				+0.5
4,453,069	-				+2.1
4,453,121	-				-0.5
4,453,128	-				+0.6
4,453,128	-				+3.0
4,453,240	+		MIT1002_03969	0.17	+1.2
4,453,289	-		MIT1002_03969	0.20	+1.8
4,453,289	-		MIT1002_03969	0.20	+0.5
4,453,289	-		MIT1002_03969	0.20	+1.8
4,453,289	-		MIT1002_03969	0.20	+1.2
4,453,293	+		MIT1002_03969	0.21	+1.9
4,453,366	+		MIT1002_03969	0.26	+2.1
4,453,374	-		MIT1002_03969	0.27	+1.7
4,453,392	+		MIT1002_03969	0.28	+1.8
4,453,402	-		MIT1002_03969	0.29	+0.5
4,453,473	+		MIT1002_03969	0.34	+1.7
4,453,473	+		MIT1002_03969	0.34	+1.7
4,453,503	-		MIT1002_03969	0.37	+1.0
4,453,530	+		MIT1002_03969	0.39	+1.0
4,453,548	+		MIT1002_03969	0.40	+2.1
4,453,556	-		MIT1002_03969	0.41	+1.1
4,453,564	+		MIT1002_03969	0.41	+0.7
4,453,595	+		MIT1002_03969	0.44	-0.2
4,453,595	+		MIT1002_03969	0.44	+2.3
4,453,595	+		MIT1002_03969	0.44	+3.1
4,453,595	+		MIT1002_03969	0.44	+1.0
4,453,595	+		MIT1002_03969	0.44	+1.4
4,453,595	+		MIT1002_03969	0.44	-0.9
4,453,603	-		MIT1002_03969	0.44	+1.4
4,453,603	-		MIT1002_03969	0.44	+1.5
4,453,680	-		MIT1002_03969	0.50	+1.6
4,453,684	+		MIT1002_03969	0.50	+1.5
4,453,685	-		MIT1002_03969	0.50	+1.1
4,453,702	-		MIT1002_03969	0.52	+1.5
4,453,757	-		MIT1002_03969	0.56	+0.6
4,453,801	+		MIT1002_03969	0.59	+1.4
4,453,857	-		MIT1002_03969	0.63	+0.6
4,454,081	-		MIT1002_03969	0.80	+2.0
4,454,117	-		MIT1002_03969	0.83	+0.8
4,454,131	+		MIT1002_03969	0.84	+2.1
4,454,139	-		MIT1002_03969	0.85	+0.5
4,454,160	-		MIT1002_03969	0.86	+1.7
4,454,165	-		MIT1002_03969	0.87	+1.0
4,454,230	-				+1.2
4,454,265	+				+2.0
4,454,305	-				+1.6
4,454,326	+				-0.7
4,454,378	+				+0.4
4,454,398	+				-2.0
4,454,415	-				+0.9
4,454,462	-				+1.5
4,454,511	+		MIT1002_03970	0.12	-2.3
4,454,511	+		MIT1002_03970	0.12	+0.3
4,454,519	-		MIT1002_03970	0.13	-0.6
4,454,519	-		MIT1002_03970	0.13	+0.3
4,454,545	+		MIT1002_03970	0.15	-0.5
4,454,545	+		MIT1002_03970	0.15	-0.5
4,454,545	+		MIT1002_03970	0.15	+0.7
4,454,553	-		MIT1002_03970	0.16	+0.6
4,454,553	-		MIT1002_03970	0.16	+0.2
4,454,553	-		MIT1002_03970	0.16	+0.6
4,454,553	-		MIT1002_03970	0.16	+0.2
4,454,553	-		MIT1002_03970	0.16	-1.8
4,454,611	+		MIT1002_03970	0.21	-0.3
4,454,611	+		MIT1002_03970	0.21	+1.5
4,454,619	-		MIT1002_03970	0.22	+0.8
4,454,619	-		MIT1002_03970	0.22	-0.0
4,454,638	+		MIT1002_03970	0.23	-0.9
4,454,665	+		MIT1002_03970	0.25	-0.7
4,454,667	-		MIT1002_03970	0.26	-0.6
4,454,713	-		MIT1002_03970	0.30	-0.0
4,454,762	+		MIT1002_03970	0.34	-1.5
4,454,770	-		MIT1002_03970	0.34	+0.7
4,454,892	-		MIT1002_03970	0.45	+0.1
4,454,931	-		MIT1002_03970	0.48	+0.5
4,454,931	-		MIT1002_03970	0.48	+2.7
4,454,973	+		MIT1002_03970	0.52	-0.8
4,455,047	+		MIT1002_03970	0.58	+0.6
4,455,055	-		MIT1002_03970	0.59	+0.4
4,455,089	-		MIT1002_03970	0.62	+0.2
4,455,091	-		MIT1002_03970	0.62	-0.4
4,455,091	-		MIT1002_03970	0.62	+0.0
4,455,099	-		MIT1002_03970	0.62	-0.6
4,455,131	+		MIT1002_03970	0.65	+0.4
4,455,229	-		MIT1002_03970	0.74	+0.6
4,455,230	+		MIT1002_03970	0.74	+0.9
4,455,276	+		MIT1002_03970	0.78	+2.5
4,455,276	+		MIT1002_03970	0.78	+0.7
4,455,279	-		MIT1002_03970	0.78	+1.7
4,455,282	+		MIT1002_03970	0.78	-1.6
4,455,328	+		MIT1002_03970	0.82	+1.8