Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03727

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03726 and MIT1002_03727 are separated by 405 nucleotidesMIT1002_03727 and MIT1002_03728 are separated by 233 nucleotides MIT1002_03726: MIT1002_03726 - Monoterpene epsilon-lactone hydrolase, at 4,162,445 to 4,163,410 _03726 MIT1002_03727: MIT1002_03727 - TraB family protein, at 4,163,816 to 4,164,703 _03727 MIT1002_03728: MIT1002_03728 - hypothetical protein, at 4,164,937 to 4,166,121 _03728 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -1 0 1 2at 4162.849 kb on + strand, within MIT1002_03726at 4162.849 kb on + strand, within MIT1002_03726at 4162.849 kb on + strand, within MIT1002_03726at 4162.857 kb on - strand, within MIT1002_03726at 4162.859 kb on - strand, within MIT1002_03726at 4162.936 kb on + strand, within MIT1002_03726at 4162.960 kb on + strand, within MIT1002_03726at 4162.961 kb on + strand, within MIT1002_03726at 4162.961 kb on + strand, within MIT1002_03726at 4162.961 kb on + strand, within MIT1002_03726at 4162.961 kb on + strand, within MIT1002_03726at 4162.969 kb on - strand, within MIT1002_03726at 4163.028 kb on - strand, within MIT1002_03726at 4163.060 kb on + strand, within MIT1002_03726at 4163.068 kb on - strand, within MIT1002_03726at 4163.109 kb on + strand, within MIT1002_03726at 4163.147 kb on + strand, within MIT1002_03726at 4163.158 kb on + strand, within MIT1002_03726at 4163.179 kb on + strand, within MIT1002_03726at 4163.297 kb on + strand, within MIT1002_03726at 4163.321 kb on - strandat 4163.321 kb on - strandat 4163.321 kb on - strandat 4163.367 kb on - strandat 4163.421 kb on + strandat 4163.430 kb on + strandat 4163.492 kb on - strandat 4163.497 kb on - strandat 4163.505 kb on + strandat 4163.506 kb on + strandat 4163.507 kb on - strandat 4163.514 kb on - strandat 4163.514 kb on - strandat 4163.536 kb on + strandat 4163.536 kb on + strandat 4163.555 kb on + strandat 4163.577 kb on + strandat 4163.577 kb on + strandat 4163.717 kb on - strandat 4163.758 kb on + strandat 4163.772 kb on - strandat 4163.773 kb on + strandat 4163.774 kb on + strandat 4163.774 kb on + strandat 4163.782 kb on - strandat 4163.782 kb on - strandat 4163.823 kb on + strandat 4164.191 kb on + strand, within MIT1002_03727at 4164.208 kb on + strand, within MIT1002_03727at 4164.208 kb on + strand, within MIT1002_03727at 4164.216 kb on - strand, within MIT1002_03727at 4164.216 kb on - strand, within MIT1002_03727at 4164.216 kb on - strand, within MIT1002_03727at 4164.251 kb on + strand, within MIT1002_03727at 4164.266 kb on - strand, within MIT1002_03727at 4164.279 kb on + strand, within MIT1002_03727at 4164.279 kb on + strand, within MIT1002_03727at 4164.279 kb on + strand, within MIT1002_03727at 4164.279 kb on + strand, within MIT1002_03727at 4164.287 kb on - strand, within MIT1002_03727at 4164.386 kb on + strand, within MIT1002_03727at 4164.470 kb on + strand, within MIT1002_03727at 4164.508 kb on - strand, within MIT1002_03727at 4164.635 kb on - strandat 4164.652 kb on - strandat 4164.706 kb on + strandat 4164.784 kb on + strandat 4164.784 kb on + strandat 4164.796 kb on - strandat 4164.798 kb on + strandat 4164.832 kb on + strandat 4164.844 kb on + strandat 4164.848 kb on - strandat 4164.930 kb on + strandat 4164.930 kb on + strandat 4164.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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4,162,849 + MIT1002_03726 0.42 +0.1
4,162,849 + MIT1002_03726 0.42 +1.2
4,162,849 + MIT1002_03726 0.42 +2.4
4,162,857 - MIT1002_03726 0.43 +1.2
4,162,859 - MIT1002_03726 0.43 -0.6
4,162,936 + MIT1002_03726 0.51 +1.0
4,162,960 + MIT1002_03726 0.53 -0.2
4,162,961 + MIT1002_03726 0.53 -0.1
4,162,961 + MIT1002_03726 0.53 +0.6
4,162,961 + MIT1002_03726 0.53 +0.9
4,162,961 + MIT1002_03726 0.53 -0.4
4,162,969 - MIT1002_03726 0.54 -0.7
4,163,028 - MIT1002_03726 0.60 +0.3
4,163,060 + MIT1002_03726 0.64 +0.2
4,163,068 - MIT1002_03726 0.64 +0.6
4,163,109 + MIT1002_03726 0.69 -0.5
4,163,147 + MIT1002_03726 0.73 +0.4
4,163,158 + MIT1002_03726 0.74 -1.3
4,163,179 + MIT1002_03726 0.76 -0.1
4,163,297 + MIT1002_03726 0.88 +0.0
4,163,321 - -0.7
4,163,321 - -1.1
4,163,321 - +0.1
4,163,367 - -0.3
4,163,421 + -0.1
4,163,430 + -0.1
4,163,492 - -0.8
4,163,497 - -0.1
4,163,505 + -0.1
4,163,506 + -0.9
4,163,507 - -0.9
4,163,514 - +0.6
4,163,514 - +1.0
4,163,536 + -1.1
4,163,536 + -0.6
4,163,555 + -0.1
4,163,577 + +0.1
4,163,577 + -0.1
4,163,717 - +0.8
4,163,758 + -1.6
4,163,772 - +0.4
4,163,773 + +0.2
4,163,774 + +0.3
4,163,774 + +0.4
4,163,782 - +0.1
4,163,782 - -0.1
4,163,823 + +1.0
4,164,191 + MIT1002_03727 0.42 +1.1
4,164,208 + MIT1002_03727 0.44 +1.0
4,164,208 + MIT1002_03727 0.44 +0.3
4,164,216 - MIT1002_03727 0.45 -1.3
4,164,216 - MIT1002_03727 0.45 -0.6
4,164,216 - MIT1002_03727 0.45 -0.5
4,164,251 + MIT1002_03727 0.49 +0.3
4,164,266 - MIT1002_03727 0.51 -0.1
4,164,279 + MIT1002_03727 0.52 +0.7
4,164,279 + MIT1002_03727 0.52 -0.9
4,164,279 + MIT1002_03727 0.52 +0.7
4,164,279 + MIT1002_03727 0.52 +1.0
4,164,287 - MIT1002_03727 0.53 -0.9
4,164,386 + MIT1002_03727 0.64 -1.0
4,164,470 + MIT1002_03727 0.74 +0.9
4,164,508 - MIT1002_03727 0.78 +1.8
4,164,635 - -1.3
4,164,652 - -0.2
4,164,706 + -0.5
4,164,784 + +0.5
4,164,784 + -0.1
4,164,796 - -0.9
4,164,798 + -0.9
4,164,832 + -0.9
4,164,844 + -1.0
4,164,848 - -0.9
4,164,930 + +2.4
4,164,930 + -1.0
4,164,930 + +1.0

Or see this region's nucleotide sequence