Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03704

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
4,136,252	+				+1.0
4,136,260	-				+0.4
4,136,319	+				+0.1
4,136,355	+				+0.9
4,136,535	+		MIT1002_03703	0.25	-0.3
4,136,543	-		MIT1002_03703	0.26	+0.7
4,136,543	-		MIT1002_03703	0.26	+1.0
4,136,555	-		MIT1002_03703	0.28	+0.3
4,136,714	-		MIT1002_03703	0.51	+0.3
4,136,770	+		MIT1002_03703	0.59	+1.7
4,136,805	+		MIT1002_03703	0.64	-1.2
4,136,815	+		MIT1002_03703	0.66	+1.3
4,136,825	-		MIT1002_03703	0.67	-0.9
4,136,825	-		MIT1002_03703	0.67	+0.1
4,136,828	-		MIT1002_03703	0.68	+0.7
4,136,836	-		MIT1002_03703	0.69	+0.8
4,136,875	-		MIT1002_03703	0.75	+1.1
4,136,894	+		MIT1002_03703	0.77	-0.6
4,136,897	-		MIT1002_03703	0.78	+0.3
4,136,902	-		MIT1002_03703	0.78	+1.1
4,136,902	-		MIT1002_03703	0.78	+0.1
4,136,906	+		MIT1002_03703	0.79	-0.6
4,136,906	+		MIT1002_03703	0.79	+0.8
4,136,906	+		MIT1002_03703	0.79	+1.2
4,136,906	+		MIT1002_03703	0.79	-0.5
4,136,906	+		MIT1002_03703	0.79	-1.0
4,136,907	-		MIT1002_03703	0.79	+0.4
4,136,913	-		MIT1002_03703	0.80	+0.2
4,136,914	-		MIT1002_03703	0.80	-1.2
4,136,914	-		MIT1002_03703	0.80	+0.8
4,136,914	-		MIT1002_03703	0.80	-0.3
4,136,914	-		MIT1002_03703	0.80	-0.5
4,136,914	-		MIT1002_03703	0.80	+0.4
4,136,914	-		MIT1002_03703	0.80	-0.5
4,136,928	+		MIT1002_03703	0.82	-1.1
4,136,933	+		MIT1002_03703	0.83	+0.2
4,136,950	-		MIT1002_03703	0.85	-0.7
4,136,950	-		MIT1002_03703	0.85	-1.2
4,136,958	-		MIT1002_03703	0.87	+1.8
4,137,092	+				-0.7
4,137,098	+				+0.9
4,137,100	+				-1.0
4,137,100	+				-1.0
4,137,118	+				-0.2
4,137,141	-				-0.4
4,137,175	-				-2.0
4,137,212	+				-0.0
4,137,212	+				-0.0
4,137,217	-				+0.7
4,137,220	-				-0.1
4,137,220	-				-0.8
4,137,290	-		MIT1002_03704	0.10	-0.6
4,137,479	+		MIT1002_03704	0.27	+0.3
4,137,479	+		MIT1002_03704	0.27	+1.1
4,137,506	+		MIT1002_03704	0.30	+0.8
4,137,542	+		MIT1002_03704	0.33	+0.4
4,137,559	+		MIT1002_03704	0.35	+2.2
4,137,559	+		MIT1002_03704	0.35	+0.9
4,137,559	+		MIT1002_03704	0.35	-1.2
4,137,559	+		MIT1002_03704	0.35	+2.7
4,137,559	+		MIT1002_03704	0.35	+0.3
4,137,559	+		MIT1002_03704	0.35	-0.3
4,137,567	-		MIT1002_03704	0.35	+1.1
4,137,567	-		MIT1002_03704	0.35	+0.5
4,137,567	-		MIT1002_03704	0.35	+0.8
4,137,567	-		MIT1002_03704	0.35	-1.2
4,137,567	-		MIT1002_03704	0.35	+0.0
4,137,567	-		MIT1002_03704	0.35	-1.2
4,137,603	+		MIT1002_03704	0.39	-1.2
4,137,638	-		MIT1002_03704	0.42	+1.2
4,137,646	+		MIT1002_03704	0.43	-0.1
4,137,716	+		MIT1002_03704	0.49	-1.6
4,137,718	+		MIT1002_03704	0.49	-0.4
4,137,725	-		MIT1002_03704	0.50	-0.1
4,137,758	+		MIT1002_03704	0.53	+0.1
4,137,769	+		MIT1002_03704	0.54	+0.1
4,137,769	+		MIT1002_03704	0.54	+0.7
4,137,775	+		MIT1002_03704	0.54	+0.1
4,137,777	-		MIT1002_03704	0.54	-0.2
4,137,828	+		MIT1002_03704	0.59	-0.1
4,137,828	+		MIT1002_03704	0.59	+0.0
4,137,975	+		MIT1002_03704	0.72	+0.6
4,137,990	+		MIT1002_03704	0.74	+2.3
4,137,996	-		MIT1002_03704	0.74	+1.5
4,138,010	+		MIT1002_03704	0.76	+1.2
4,138,011	-		MIT1002_03704	0.76	+0.3
4,138,026	-		MIT1002_03704	0.77	-0.6
4,138,041	-		MIT1002_03704	0.78	+1.1
4,138,069	-		MIT1002_03704	0.81	+1.0
4,138,083	-		MIT1002_03704	0.82	-0.0
4,138,112	+		MIT1002_03704	0.85	-2.4
4,138,121	+		MIT1002_03704	0.86	-1.1
4,138,129	-		MIT1002_03704	0.86	+0.8
4,138,187	+				+0.5
4,138,230	+				-3.5
4,138,230	+				+0.4
4,138,230	+				+1.2
4,138,235	+				+0.9
4,138,235	+				+0.5
4,138,265	+				+0.1
4,138,265	+				+0.5
4,138,290	+				-0.3
4,138,296	+				+0.6
4,138,296	+				-1.2
4,138,296	+				+0.2
4,138,304	-				+1.6
4,138,347	-				+0.4
4,138,365	-				+0.1
4,138,367	+				-0.3
4,138,369	+				-0.4
4,138,369	+				+1.4
4,138,375	-				-1.9
4,138,501	+		MIT1002_03705	0.17	-0.9
4,138,501	+		MIT1002_03705	0.17	-0.7
4,138,530	-		MIT1002_03705	0.20	-0.8
4,138,549	-		MIT1002_03705	0.21	-0.2
4,138,578	-		MIT1002_03705	0.24	-3.4
4,138,629	+		MIT1002_03705	0.28	-0.2
4,138,658	+		MIT1002_03705	0.30	+0.3
4,138,658	-		MIT1002_03705	0.30	+0.0
4,138,708	+		MIT1002_03705	0.35	-0.4
4,138,778	+		MIT1002_03705	0.41	-0.7
4,138,786	-		MIT1002_03705	0.41	+1.2
4,138,793	-		MIT1002_03705	0.42	+0.2
4,138,793	-		MIT1002_03705	0.42	-0.2
4,138,825	+		MIT1002_03705	0.45	+0.6
4,138,825	+		MIT1002_03705	0.45	+1.4
4,138,831	-		MIT1002_03705	0.45	-0.4
4,138,865	+		MIT1002_03705	0.48	-0.2
4,138,865	+		MIT1002_03705	0.48	+0.8
4,138,890	+		MIT1002_03705	0.50	-0.8
4,138,950	+		MIT1002_03705	0.55	+0.6
4,139,026	-		MIT1002_03705	0.62	-2.4
4,139,028	+		MIT1002_03705	0.62	-1.0
4,139,139	+		MIT1002_03705	0.71	-0.1
4,139,189	-		MIT1002_03705	0.75	-1.3