Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03496

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,905,984	-		MIT1002_03495	0.81	+0.8
3,905,986	+		MIT1002_03495	0.81	+0.1
3,905,986	+		MIT1002_03495	0.81	+0.8
3,906,084	+		MIT1002_03495	0.85	+0.8
3,906,117	+		MIT1002_03495	0.86	-1.4
3,906,157	-		MIT1002_03495	0.87	-0.8
3,906,243	+		MIT1002_03495	0.90	-1.8
3,906,251	-				-0.7
3,906,312	-				-2.5
3,906,318	+				+1.0
3,906,318	+				+1.7
3,906,342	+				+0.4
3,906,397	+				-1.8
3,906,421	+				+1.1
3,906,425	+				-2.6
3,906,429	-				-3.1
3,906,469	-				-2.6
3,906,469	-				-0.3
3,906,494	+				+1.1
3,906,524	+				+1.3
3,906,532	-				-1.5
3,906,550	-				-0.7
3,906,550	-				+1.0
3,906,550	-				+1.7
3,906,560	-				-0.6
3,906,595	+				+0.8
3,906,699	+				+0.1
3,906,699	+				+1.5
3,906,705	+				-1.4
3,906,707	-				-0.4
3,906,713	-				+0.4
3,906,780	+				+2.3
3,906,792	+				-0.5
3,906,816	+				+0.1
3,906,818	+				-0.2
3,906,993	+				+0.5
3,907,263	+		MIT1002_03496	0.38	+1.7
3,907,271	-		MIT1002_03496	0.38	+1.2
3,907,292	+		MIT1002_03496	0.41	-0.1
3,907,379	-		MIT1002_03496	0.51	+0.4
3,907,425	+		MIT1002_03496	0.56	-0.3
3,907,446	+		MIT1002_03496	0.58	+0.6
3,907,492	+		MIT1002_03496	0.63	-0.4
3,907,512	+		MIT1002_03496	0.65	+1.7
3,907,512	+		MIT1002_03496	0.65	+0.6
3,907,520	-		MIT1002_03496	0.66	+0.1
3,907,565	+		MIT1002_03496	0.71	+1.6
3,907,573	-		MIT1002_03496	0.72	-0.8
3,907,588	-		MIT1002_03496	0.74	+0.1
3,907,674	-		MIT1002_03496	0.83	+0.1
3,907,716	+		MIT1002_03496	0.88	-0.4
3,907,731	+		MIT1002_03496	0.90	-2.9
3,907,734	+				-0.3
3,907,744	-				+0.1
3,907,810	-				-0.8
3,907,912	+				+0.1
3,907,912	+				-0.9
3,907,920	-		MIT1002_03497	0.11	+0.6
3,907,978	-		MIT1002_03497	0.17	+0.4
3,907,999	-		MIT1002_03497	0.19	+1.0
3,908,059	+		MIT1002_03497	0.25	+1.0
3,908,067	-		MIT1002_03497	0.26	+0.4
3,908,101	-		MIT1002_03497	0.30	-0.1
3,908,243	+		MIT1002_03497	0.44	+0.1
3,908,243	+		MIT1002_03497	0.44	+1.1
3,908,243	+		MIT1002_03497	0.44	-3.2
3,908,251	-		MIT1002_03497	0.45	-0.8
3,908,303	+		MIT1002_03497	0.51	-2.0
3,908,346	+		MIT1002_03497	0.55	-0.7
3,908,353	-		MIT1002_03497	0.56	+1.2
3,908,457	-		MIT1002_03497	0.67	+0.5
3,908,457	-		MIT1002_03497	0.67	+0.5
3,908,468	+		MIT1002_03497	0.68	+0.6
3,908,559	-		MIT1002_03497	0.78	+0.1
3,908,634	-		MIT1002_03497	0.85	-0.2
3,908,635	-		MIT1002_03497	0.86	-0.8
3,908,645	-		MIT1002_03497	0.87	-0.9
3,908,648	-		MIT1002_03497	0.87	-0.1
3,908,685	+				-0.5
3,908,700	-				+1.4
3,908,726	-				+0.2
3,908,800	-				+0.2
3,908,800	-				-0.5