Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03343

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,735,997	+		MIT1002_03342	0.74	-1.9
3,736,004	+		MIT1002_03342	0.75	-0.3
3,736,004	+		MIT1002_03342	0.75	+0.4
3,736,004	+		MIT1002_03342	0.75	+1.1
3,736,033	+		MIT1002_03342	0.77	-3.8
3,736,089	+		MIT1002_03342	0.81	-0.3
3,736,104	-		MIT1002_03342	0.82	-0.4
3,736,127	-		MIT1002_03342	0.83	+0.7
3,736,336	-				-0.4
3,736,336	-				-0.5
3,736,340	+				+0.6
3,736,420	+				-0.0
3,736,420	+				+1.0
3,736,420	+				-0.6
3,736,420	+				+1.5
3,736,420	+				+0.9
3,736,662	+				+1.1
3,736,662	+				+0.1
3,736,662	+				-0.3
3,736,662	+				-1.2
3,736,662	+				-1.6
3,736,662	+				-1.2
3,736,662	+				-1.1
3,736,662	+				+0.7
3,736,662	+				+1.2
3,736,662	+				-0.9
3,736,663	+				-0.4
3,736,670	-				+1.1
3,736,670	-				-1.8
3,736,670	-				+1.9
3,736,670	-				-2.0
3,736,670	-				+0.3
3,736,670	-				-0.3
3,736,670	-				+1.0
3,736,708	+				+0.7
3,736,709	+				+1.5
3,736,709	+				+0.0
3,736,709	+				-0.4
3,736,709	+				+2.9
3,736,709	+				+1.3
3,736,709	+				-1.1
3,736,709	+				-0.8
3,736,709	+				-1.7
3,736,709	+				+0.5
3,736,709	+				+0.4
3,736,709	+				-1.3
3,736,709	+				-0.7
3,736,709	+				+1.6
3,736,709	+				-1.0
3,736,709	+				+0.7
3,736,709	+				+0.3
3,736,709	+				+1.0
3,736,709	+				+0.6
3,736,709	+				-0.6
3,736,709	+				-1.3
3,736,709	+				+0.0
3,736,709	+				+0.3
3,736,709	+				-2.3
3,736,709	+				+1.3
3,736,709	+				-0.8
3,736,709	+				-1.1
3,736,709	+				-0.5
3,736,709	+				+0.3
3,736,709	+				+1.5
3,736,709	+				+1.3
3,736,709	+				+0.2
3,736,709	+				+1.3
3,736,709	+				+0.0
3,736,709	+				-3.7
3,736,709	+				+0.5
3,736,709	+				+0.3
3,736,709	+				+0.7
3,736,709	+				-1.1
3,736,709	+				-0.1
3,736,709	+				+1.2
3,736,709	+				+0.1
3,736,709	+				+0.1
3,736,709	+				+0.3
3,736,709	+				+1.4
3,736,709	+				-0.6
3,736,709	+				+0.2
3,736,709	+				+0.6
3,736,709	+				-0.4
3,736,709	+				-0.5
3,736,709	+				+0.0
3,736,709	+				-0.0
3,736,709	+				+0.6
3,736,709	+				+0.5
3,736,709	+				+0.0
3,736,709	+				+0.5
3,736,709	+				+1.0
3,736,709	+				-0.5
3,736,709	+				-1.1
3,736,709	+				+0.2
3,736,709	+				+0.7
3,736,709	+				-0.8
3,736,717	-				-0.3
3,736,717	-				-1.2
3,736,717	-				+0.0
3,736,717	-				+1.8
3,736,717	-				+1.6
3,736,717	-				+0.2
3,736,717	-				+0.8
3,736,717	-				-0.3
3,736,717	-				-0.5
3,736,717	-				-0.9
3,736,717	-				+0.2
3,736,717	-				+0.9
3,736,717	-				+0.6
3,736,717	-				+0.7
3,736,717	-				+0.3
3,736,717	-				+0.6
3,736,717	-				+0.4
3,736,717	-				+0.4
3,736,717	-				+0.9
3,736,717	-				-0.5
3,736,717	-				+0.2
3,736,717	-				-1.3
3,736,717	-				-0.4
3,736,717	-				+0.2
3,736,717	-				-1.3
3,736,717	-				-1.3
3,736,717	-				+0.0
3,736,717	-				-0.8
3,736,717	-				+0.7
3,736,717	-				-0.9
3,736,717	-				-1.4
3,736,717	-				-0.0
3,736,717	-				+1.0
3,736,717	-				+0.2
3,736,717	-				-2.5
3,736,717	-				+1.0
3,736,717	-				+2.0
3,736,717	-				-1.0
3,736,717	-				+1.1
3,736,717	-				+1.1
3,736,717	-				-0.4
3,736,717	-				-0.0
3,736,717	-				+0.7
3,736,717	-				-0.8
3,736,717	-				+0.5
3,736,717	-				-1.9
3,736,717	-				+0.5
3,736,717	-				+0.3
3,736,717	-				+1.2
3,736,717	-				-1.2
3,736,717	-				+0.9
3,736,717	-				+0.5
3,736,717	-				+0.4
3,736,717	-				-0.3
3,736,717	-				+1.2
3,736,717	-				+1.2
3,736,717	-				-0.7
3,736,717	-				-0.3
3,736,717	-				-2.0
3,736,719	+				-0.8
3,737,024	-				+0.8
3,737,029	+				-0.2
3,737,039	-				-0.7
3,737,059	+				-0.3
3,737,061	+				+0.8
3,737,061	+				-2.0
3,737,061	+				-0.5
3,737,064	+				-0.6
3,737,107	+				-0.0
3,737,107	+				-1.2
3,737,112	+				-0.2
3,737,153	+		MIT1002_03343	0.12	-1.8
3,737,180	+		MIT1002_03343	0.14	-3.3
3,737,286	-		MIT1002_03343	0.21	+0.3
3,737,351	+		MIT1002_03343	0.26	+0.5
3,737,351	+		MIT1002_03343	0.26	-0.8
3,737,351	+		MIT1002_03343	0.26	-0.8
3,737,351	+		MIT1002_03343	0.26	-0.1
3,737,359	-		MIT1002_03343	0.26	+0.4
3,737,359	-		MIT1002_03343	0.26	+1.7
3,737,418	+		MIT1002_03343	0.30	+1.0
3,737,419	+		MIT1002_03343	0.30	-2.5
3,737,613	+		MIT1002_03343	0.44	+1.6
3,737,636	+		MIT1002_03343	0.46	+0.6
3,737,644	-		MIT1002_03343	0.46	+0.5
3,737,644	-		MIT1002_03343	0.46	-0.2
3,737,703	-		MIT1002_03343	0.50	-0.7
3,737,740	-		MIT1002_03343	0.53	+0.2
3,737,742	+		MIT1002_03343	0.53	-0.7
3,737,747	+		MIT1002_03343	0.53	-0.4
3,737,747	+		MIT1002_03343	0.53	-0.8
3,737,750	-		MIT1002_03343	0.53	-1.3
3,737,755	-		MIT1002_03343	0.54	-0.6
3,737,755	-		MIT1002_03343	0.54	+0.1
3,737,755	-		MIT1002_03343	0.54	+0.6
3,737,755	-		MIT1002_03343	0.54	+2.0
3,737,755	-		MIT1002_03343	0.54	+1.3
3,737,755	-		MIT1002_03343	0.54	+0.6
3,737,779	-		MIT1002_03343	0.55	-0.1
3,737,793	-		MIT1002_03343	0.56	-0.3
3,737,800	+		MIT1002_03343	0.57	-0.5
3,737,808	-		MIT1002_03343	0.57	+0.1
3,737,816	-		MIT1002_03343	0.58	-0.2
3,737,818	+		MIT1002_03343	0.58	+1.7
3,737,840	-		MIT1002_03343	0.60	-2.5
3,737,844	+		MIT1002_03343	0.60	+0.9
3,737,852	-		MIT1002_03343	0.61	+0.3
3,737,855	-		MIT1002_03343	0.61	-0.4
3,737,996	+		MIT1002_03343	0.71	+1.4
3,737,996	+		MIT1002_03343	0.71	-0.3
3,738,050	-		MIT1002_03343	0.74	-0.2
3,738,123	+		MIT1002_03343	0.79	+0.7
3,738,220	+		MIT1002_03343	0.86	+0.8
3,738,242	-		MIT1002_03343	0.88	-0.0
3,738,262	-		MIT1002_03343	0.89	+0.3
3,738,367	+				+0.6
3,738,367	+				+0.4
3,738,375	-				+0.0
3,738,406	+				+0.2
3,738,466	+				-1.0
3,738,474	-				-0.1
3,738,474	-				-0.0
3,738,474	-				-0.4
3,738,474	-				-0.3
3,738,501	+				-0.2
3,738,509	-				+0.3
3,738,509	-				-0.6
3,738,515	+				+0.2
3,738,523	-		MIT1002_03344	0.11	-0.7
3,738,523	-		MIT1002_03344	0.11	-0.4
3,738,547	+		MIT1002_03344	0.16	+1.0
3,738,909	+				+0.6
3,738,951	-				+1.0
3,739,019	-				+0.3
3,739,019	-				+0.7
3,739,093	-				+0.3
3,739,217	+				+1.3
3,739,219	-				+1.2
3,739,274	+				+0.3
3,739,288	-				-0.9
3,739,288	-				-0.8
3,739,339	-				-1.5
3,739,352	-				+0.1
3,739,372	+				-0.8
3,739,380	+				+0.5
3,739,381	-				+0.4
3,739,381	-				+0.8