Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03328

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,716,306	+				-0.7
3,716,336	-		MIT1002_03327	0.12	-2.0
3,716,338	+		MIT1002_03327	0.13	-0.4
3,716,364	+		MIT1002_03327	0.16	-0.7
3,716,384	-		MIT1002_03327	0.18	+2.8
3,716,622	+		MIT1002_03327	0.45	-0.2
3,716,630	-		MIT1002_03327	0.46	-0.0
3,716,668	-		MIT1002_03327	0.50	+0.0
3,716,674	-		MIT1002_03327	0.51	-1.0
3,716,715	+		MIT1002_03327	0.56	-0.7
3,716,852	+		MIT1002_03327	0.71	-1.1
3,716,852	+		MIT1002_03327	0.71	-1.5
3,716,900	-		MIT1002_03327	0.77	+1.0
3,716,915	-		MIT1002_03327	0.78	-1.4
3,716,954	+		MIT1002_03327	0.83	+0.9
3,717,021	-				+0.4
3,717,021	-				-2.1
3,717,122	-				+0.2
3,717,137	+				-1.9
3,717,137	+				-1.1
3,717,140	+				+0.4
3,717,151	+				-1.1
3,717,270	-				+0.4
3,717,270	-				+0.3
3,717,270	-				-0.2
3,717,292	-				-0.6
3,717,354	-				+0.1
3,717,358	+				+2.1
3,717,364	-				-0.6
3,717,364	-				-0.3
3,717,381	-				+1.0
3,717,437	-				-0.5
3,717,437	-				+0.1
3,717,442	-				-0.1
3,717,442	-				+1.3
3,717,474	+		MIT1002_03328	0.11	+0.2
3,717,497	-		MIT1002_03328	0.12	+0.0
3,717,545	-		MIT1002_03328	0.14	+0.7
3,717,565	-		MIT1002_03328	0.15	+0.6
3,717,574	-		MIT1002_03328	0.16	+1.5
3,717,633	+		MIT1002_03328	0.19	+0.1
3,717,674	+		MIT1002_03328	0.21	-3.0
3,717,811	+		MIT1002_03328	0.27	-0.3
3,717,813	+		MIT1002_03328	0.28	-0.8
3,717,813	+		MIT1002_03328	0.28	+0.5
3,717,813	+		MIT1002_03328	0.28	-2.6
3,717,813	+		MIT1002_03328	0.28	+0.1
3,717,813	+		MIT1002_03328	0.28	-0.5
3,717,813	+		MIT1002_03328	0.28	-0.8
3,717,821	-		MIT1002_03328	0.28	-1.1
3,717,821	-		MIT1002_03328	0.28	-0.8
3,717,821	-		MIT1002_03328	0.28	-1.2
3,717,821	-		MIT1002_03328	0.28	-0.7
3,717,906	+		MIT1002_03328	0.32	+0.7
3,717,912	-		MIT1002_03328	0.32	-0.6
3,717,920	+		MIT1002_03328	0.33	-1.1
3,717,937	-		MIT1002_03328	0.34	+0.7
3,717,937	-		MIT1002_03328	0.34	+1.3
3,717,989	-		MIT1002_03328	0.36	-5.0
3,718,026	+		MIT1002_03328	0.38	+0.6
3,718,064	-		MIT1002_03328	0.40	+0.3
3,718,100	-		MIT1002_03328	0.42	-0.6
3,718,135	-		MIT1002_03328	0.43	-1.1
3,718,143	-		MIT1002_03328	0.44	+1.0
3,718,213	-		MIT1002_03328	0.47	+1.3
3,718,234	-		MIT1002_03328	0.48	+0.5
3,718,261	-		MIT1002_03328	0.50	+1.2
3,718,261	-		MIT1002_03328	0.50	-0.3
3,718,366	+		MIT1002_03328	0.55	-0.8
3,718,371	+		MIT1002_03328	0.55	-0.8
3,718,379	+		MIT1002_03328	0.55	+0.4
3,718,499	-		MIT1002_03328	0.61	+0.2
3,718,519	+		MIT1002_03328	0.62	-0.6
3,718,536	-		MIT1002_03328	0.63	+0.6
3,718,556	-		MIT1002_03328	0.64	-0.1
3,718,642	+		MIT1002_03328	0.68	-0.3
3,718,647	+		MIT1002_03328	0.68	+0.3
3,718,652	+		MIT1002_03328	0.69	-1.8
3,718,652	+		MIT1002_03328	0.69	-1.1
3,718,660	-		MIT1002_03328	0.69	+2.4
3,718,660	-		MIT1002_03328	0.69	-0.6
3,718,664	+		MIT1002_03328	0.69	+0.2
3,718,664	+		MIT1002_03328	0.69	+0.2
3,718,664	+		MIT1002_03328	0.69	+0.4
3,718,664	+		MIT1002_03328	0.69	-1.7
3,718,670	+		MIT1002_03328	0.70	+1.3
3,718,670	+		MIT1002_03328	0.70	-0.2
3,718,678	-		MIT1002_03328	0.70	-0.5
3,718,793	-		MIT1002_03328	0.76	-0.8
3,718,825	-		MIT1002_03328	0.77	+0.3
3,718,928	+		MIT1002_03328	0.82	+1.4
3,718,936	-		MIT1002_03328	0.83	-0.4
3,718,938	+		MIT1002_03328	0.83	-1.4
3,718,938	+		MIT1002_03328	0.83	+0.0
3,718,938	+		MIT1002_03328	0.83	-2.4
3,718,946	-		MIT1002_03328	0.83	-0.6
3,718,946	-		MIT1002_03328	0.83	-1.1
3,718,946	-		MIT1002_03328	0.83	-0.3
3,718,946	-		MIT1002_03328	0.83	+1.3
3,718,973	+		MIT1002_03328	0.84	+0.4
3,718,973	+		MIT1002_03328	0.84	+1.3
3,718,976	-		MIT1002_03328	0.85	-0.5
3,718,980	+		MIT1002_03328	0.85	-0.6
3,718,981	-		MIT1002_03328	0.85	+0.3
3,719,002	+		MIT1002_03328	0.86	-0.9
3,719,003	-		MIT1002_03328	0.86	-0.4
3,719,022	+		MIT1002_03328	0.87	+0.2
3,719,032	+		MIT1002_03328	0.87	-0.2
3,719,078	-		MIT1002_03328	0.90	+0.1
3,719,140	-				+0.9
3,719,174	-				-0.1
3,719,186	+				+0.8
3,719,196	+				+1.1
3,719,297	+				-0.0
3,719,316	+				+0.9
3,719,316	+				+0.1
3,719,449	-				+0.9
3,719,493	+				+0.8
3,719,525	-				-1.2
3,719,531	-				-1.2
3,719,539	-				-0.6
3,719,540	+				-1.5
3,719,607	+		MIT1002_03329	0.11	-0.0
3,719,612	+		MIT1002_03329	0.12	+0.4
3,719,647	+		MIT1002_03329	0.16	-1.7
3,719,647	+		MIT1002_03329	0.16	-2.3
3,719,655	-		MIT1002_03329	0.17	+0.0
3,719,707	-		MIT1002_03329	0.23	-0.5
3,719,718	+		MIT1002_03329	0.24	-0.3
3,719,731	+		MIT1002_03329	0.25	-0.1
3,719,742	-		MIT1002_03329	0.26	-1.6
3,719,744	-		MIT1002_03329	0.27	-0.3
3,719,780	+		MIT1002_03329	0.31	-0.8
3,719,788	-		MIT1002_03329	0.32	-0.6
3,719,814	-		MIT1002_03329	0.34	-0.5
3,719,814	-		MIT1002_03329	0.34	-1.0
3,719,815	-		MIT1002_03329	0.35	-0.5
3,719,860	-		MIT1002_03329	0.40	-1.2
3,719,860	-		MIT1002_03329	0.40	+1.9
3,719,907	+		MIT1002_03329	0.45	-1.5
3,719,958	-		MIT1002_03329	0.50	-0.8
3,719,958	-		MIT1002_03329	0.50	-1.2
3,720,041	+		MIT1002_03329	0.60	-1.3
3,720,042	-		MIT1002_03329	0.60	-1.1
3,720,059	-		MIT1002_03329	0.62	+0.8