Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03212

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,582,284	+		MIT1002_03211	0.16	-0.2
3,582,294	-		MIT1002_03211	0.17	-0.5
3,582,324	+		MIT1002_03211	0.19	-3.6
3,582,332	-		MIT1002_03211	0.20	-0.3
3,582,332	-		MIT1002_03211	0.20	+2.5
3,582,332	-		MIT1002_03211	0.20	+0.6
3,582,354	-		MIT1002_03211	0.22	+1.0
3,582,394	+		MIT1002_03211	0.25	+0.3
3,582,397	-		MIT1002_03211	0.26	+1.3
3,582,408	+		MIT1002_03211	0.26	-0.8
3,582,424	-		MIT1002_03211	0.28	-1.9
3,582,437	+		MIT1002_03211	0.29	-0.6
3,582,474	+		MIT1002_03211	0.32	+0.8
3,582,482	-		MIT1002_03211	0.33	+0.2
3,582,491	-		MIT1002_03211	0.33	-0.3
3,582,493	+		MIT1002_03211	0.34	+0.3
3,582,501	-		MIT1002_03211	0.34	+0.1
3,582,506	-		MIT1002_03211	0.35	+0.1
3,582,581	-		MIT1002_03211	0.41	-1.4
3,582,707	+		MIT1002_03211	0.52	+0.6
3,582,738	+		MIT1002_03211	0.54	+0.5
3,582,806	-		MIT1002_03211	0.60	+0.9
3,582,817	-		MIT1002_03211	0.61	+1.0
3,582,851	-		MIT1002_03211	0.64	-0.0
3,582,869	+		MIT1002_03211	0.65	+0.3
3,582,877	-		MIT1002_03211	0.66	+1.4
3,582,886	+		MIT1002_03211	0.67	-0.7
3,582,894	-		MIT1002_03211	0.67	-0.8
3,582,894	-		MIT1002_03211	0.67	-0.3
3,582,947	-		MIT1002_03211	0.72	-0.0
3,582,961	-		MIT1002_03211	0.73	-0.3
3,582,961	-		MIT1002_03211	0.73	-0.3
3,582,978	+		MIT1002_03211	0.74	-0.4
3,582,978	+		MIT1002_03211	0.74	+0.1
3,583,135	-		MIT1002_03211	0.88	+0.2
3,583,140	+		MIT1002_03211	0.88	-0.3
3,583,235	-				-2.3
3,583,237	+				+1.0
3,583,400	+				+0.2
3,583,424	+				+0.3
3,583,426	+				-0.9
3,583,592	+		MIT1002_03212	0.20	+0.6
3,583,625	-		MIT1002_03212	0.22	+1.0
3,583,630	-		MIT1002_03212	0.22	+1.7
3,583,664	+		MIT1002_03212	0.24	+1.2
3,583,699	+		MIT1002_03212	0.27	-0.4
3,583,767	+		MIT1002_03212	0.31	+0.1
3,583,775	-		MIT1002_03212	0.31	-0.4
3,583,775	-		MIT1002_03212	0.31	+1.6
3,583,775	-		MIT1002_03212	0.31	-0.7
3,583,780	-		MIT1002_03212	0.32	+1.9
3,583,811	+		MIT1002_03212	0.34	-0.3
3,583,869	+		MIT1002_03212	0.37	+0.5
3,583,875	+		MIT1002_03212	0.38	-0.7
3,583,889	-		MIT1002_03212	0.39	-0.6
3,583,970	+		MIT1002_03212	0.44	+1.3
3,583,976	-		MIT1002_03212	0.44	+1.1
3,584,001	-		MIT1002_03212	0.46	+0.2
3,584,004	-		MIT1002_03212	0.46	+0.4
3,584,028	+		MIT1002_03212	0.47	+0.7
3,584,032	+		MIT1002_03212	0.48	-1.5
3,584,040	-		MIT1002_03212	0.48	+0.6
3,584,069	+		MIT1002_03212	0.50	-0.0
3,584,076	+		MIT1002_03212	0.51	+0.2
3,584,076	+		MIT1002_03212	0.51	+1.2
3,584,076	-		MIT1002_03212	0.51	+2.5
3,584,076	-		MIT1002_03212	0.51	+0.3
3,584,084	-		MIT1002_03212	0.51	-0.8
3,584,084	-		MIT1002_03212	0.51	-1.2
3,584,201	+		MIT1002_03212	0.59	+0.1
3,584,241	+		MIT1002_03212	0.61	+0.1
3,584,249	-		MIT1002_03212	0.62	+0.7
3,584,249	-		MIT1002_03212	0.62	-0.9
3,584,274	+		MIT1002_03212	0.63	-1.9
3,584,312	-		MIT1002_03212	0.66	+1.2
3,584,376	-		MIT1002_03212	0.70	+0.5
3,584,488	+		MIT1002_03212	0.77	+0.4
3,584,488	+		MIT1002_03212	0.77	+1.6
3,584,496	-		MIT1002_03212	0.77	-0.0
3,584,496	-		MIT1002_03212	0.77	+1.6
3,584,506	-		MIT1002_03212	0.78	-0.1
3,584,506	-		MIT1002_03212	0.78	-0.4
3,584,508	+		MIT1002_03212	0.78	+0.2
3,584,634	+		MIT1002_03212	0.86	-1.0
3,584,647	-		MIT1002_03212	0.87	+1.5
3,584,724	+				-1.0
3,584,783	-				+0.4
3,584,811	-				+0.6
3,584,813	-				-2.2
3,584,957	+		MIT1002_03213	0.14	-0.1
3,585,004	-		MIT1002_03213	0.22	-0.1
3,585,029	-		MIT1002_03213	0.26	-0.0
3,585,095	+		MIT1002_03213	0.38	-0.0
3,585,095	+		MIT1002_03213	0.38	+0.7
3,585,103	-		MIT1002_03213	0.40	-1.2
3,585,269	+		MIT1002_03213	0.69	+0.3
3,585,269	+		MIT1002_03213	0.69	-1.0
3,585,269	+		MIT1002_03213	0.69	+0.7
3,585,277	-		MIT1002_03213	0.70	+0.9
3,585,277	-		MIT1002_03213	0.70	+0.3
3,585,297	+		MIT1002_03213	0.74	-1.7
3,585,297	+		MIT1002_03213	0.74	-0.8
3,585,299	+		MIT1002_03213	0.74	-1.6
3,585,305	-		MIT1002_03213	0.75	+1.0
3,585,305	-		MIT1002_03213	0.75	-0.5
3,585,329	-		MIT1002_03213	0.79	-2.3
3,585,409	+				+1.3
3,585,422	-				+0.3
3,585,474	-				+0.4
3,585,546	+		MIT1002_03214	0.12	+0.5
3,585,554	-		MIT1002_03214	0.13	+0.7
3,585,568	-		MIT1002_03214	0.14	+0.3
3,585,570	+		MIT1002_03214	0.14	-0.8
3,585,570	+		MIT1002_03214	0.14	+1.5
3,585,570	+		MIT1002_03214	0.14	+0.5
3,585,575	+		MIT1002_03214	0.15	-0.5
3,585,578	-		MIT1002_03214	0.15	+0.2
3,585,578	-		MIT1002_03214	0.15	+0.5
3,585,578	-		MIT1002_03214	0.15	-1.4
3,585,583	-		MIT1002_03214	0.16	-1.7
3,585,583	-		MIT1002_03214	0.16	-0.6
3,585,595	-		MIT1002_03214	0.17	-1.3
3,585,649	-		MIT1002_03214	0.23	+0.1
3,585,700	-		MIT1002_03214	0.29	-0.1
3,585,710	+		MIT1002_03214	0.30	-0.7
3,585,728	-		MIT1002_03214	0.32	+0.1
3,585,728	-		MIT1002_03214	0.32	-0.1
3,585,740	-		MIT1002_03214	0.33	+0.6
3,585,765	+		MIT1002_03214	0.36	-0.5
3,585,775	+		MIT1002_03214	0.37	-0.3