Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03181

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,543,545	-				-4.2
3,543,571	-				-0.1
3,543,628	+				+1.4
3,543,628	-				+0.1
3,543,630	+				+0.4
3,543,630	+				+0.3
3,543,630	+				-0.5
3,543,638	-				+0.2
3,543,638	-				-0.3
3,543,638	-				-0.3
3,543,638	-				+0.1
3,543,638	-				-1.6
3,543,663	+				+0.3
3,543,752	+		MIT1002_03180	0.21	-1.2
3,543,784	+		MIT1002_03180	0.30	-0.4
3,543,950	+		MIT1002_03180	0.74	+0.1
3,543,978	-		MIT1002_03180	0.81	-1.6
3,544,004	+		MIT1002_03180	0.88	+0.6
3,544,032	-				+0.4
3,544,032	-				+0.5
3,544,128	+				+0.6
3,544,220	+				+1.1
3,544,289	+				-1.1
3,544,299	+				+0.7
3,544,339	-				-1.7
3,544,490	-				-1.4
3,544,673	-		MIT1002_03181	0.14	-0.6
3,544,678	+		MIT1002_03181	0.15	-1.7
3,544,739	-		MIT1002_03181	0.18	-1.5
3,544,778	+		MIT1002_03181	0.20	+1.3
3,544,786	-		MIT1002_03181	0.20	-0.5
3,544,890	+		MIT1002_03181	0.26	-0.7
3,544,945	-		MIT1002_03181	0.29	-0.7
3,544,961	+		MIT1002_03181	0.30	+0.1
3,544,979	-		MIT1002_03181	0.31	-0.4
3,545,020	+		MIT1002_03181	0.33	-0.4
3,545,035	-		MIT1002_03181	0.34	-0.9
3,545,045	-		MIT1002_03181	0.35	-1.8
3,545,103	-		MIT1002_03181	0.38	-2.5
3,545,199	+		MIT1002_03181	0.43	-1.3
3,545,199	+		MIT1002_03181	0.43	-3.0
3,545,207	-		MIT1002_03181	0.43	-0.4
3,545,207	-		MIT1002_03181	0.43	-2.1
3,545,296	-		MIT1002_03181	0.48	-1.8
3,545,296	-		MIT1002_03181	0.48	-0.2
3,545,362	-		MIT1002_03181	0.52	-0.5
3,545,708	-		MIT1002_03181	0.71	-0.5
3,545,816	-		MIT1002_03181	0.77	-1.1
3,545,972	+		MIT1002_03181	0.85	-1.9
3,546,000	+		MIT1002_03181	0.87	-2.4
3,546,060	-				-0.1
3,546,150	+				-2.9
3,546,175	+				-0.4
3,546,257	-				-2.5
3,546,482	+				+0.2