Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03041

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,391,680	+		MIT1002_03040	0.44	+0.4
3,391,680	+		MIT1002_03040	0.44	-0.4
3,391,688	-		MIT1002_03040	0.45	+0.8
3,391,729	-		MIT1002_03040	0.48	+0.2
3,391,743	+		MIT1002_03040	0.49	+0.9
3,391,756	-		MIT1002_03040	0.50	+0.6
3,391,775	-		MIT1002_03040	0.51	+1.4
3,391,889	-		MIT1002_03040	0.59	+0.5
3,391,935	+		MIT1002_03040	0.62	+0.4
3,391,985	+		MIT1002_03040	0.66	-2.2
3,391,985	+		MIT1002_03040	0.66	-0.3
3,391,993	-		MIT1002_03040	0.66	-1.0
3,391,993	-		MIT1002_03040	0.66	+0.7
3,391,993	-		MIT1002_03040	0.66	-0.2
3,391,993	-		MIT1002_03040	0.66	-0.4
3,391,995	+		MIT1002_03040	0.66	+0.2
3,391,995	+		MIT1002_03040	0.66	+0.6
3,391,995	+		MIT1002_03040	0.66	-0.3
3,392,003	-		MIT1002_03040	0.67	+0.2
3,392,003	-		MIT1002_03040	0.67	-0.1
3,392,015	+		MIT1002_03040	0.68	-0.9
3,392,015	+		MIT1002_03040	0.68	+0.5
3,392,015	+		MIT1002_03040	0.68	-0.1
3,392,017	-		MIT1002_03040	0.68	+0.5
3,392,023	-		MIT1002_03040	0.68	+1.0
3,392,023	-		MIT1002_03040	0.68	-0.2
3,392,074	+		MIT1002_03040	0.72	+0.9
3,392,074	+		MIT1002_03040	0.72	+0.1
3,392,074	+		MIT1002_03040	0.72	-0.7
3,392,074	+		MIT1002_03040	0.72	-0.1
3,392,082	-		MIT1002_03040	0.73	-1.0
3,392,082	-		MIT1002_03040	0.73	+0.8
3,392,082	-		MIT1002_03040	0.73	+0.6
3,392,098	+		MIT1002_03040	0.74	+1.2
3,392,106	-		MIT1002_03040	0.74	-0.0
3,392,163	-		MIT1002_03040	0.78	+0.5
3,392,163	-		MIT1002_03040	0.78	-0.3
3,392,204	-		MIT1002_03040	0.81	-0.5
3,392,204	-		MIT1002_03040	0.81	-0.3
3,392,209	+		MIT1002_03040	0.82	-0.4
3,392,284	+		MIT1002_03040	0.87	+2.1
3,392,316	+		MIT1002_03040	0.89	-0.4
3,392,333	+				+0.2
3,392,333	+				+0.7
3,392,333	+				-0.8
3,392,333	+				-2.2
3,392,333	+				+0.7
3,392,333	+				-0.8
3,392,333	+				+0.2
3,392,333	+				+0.8
3,392,333	+				-0.4
3,392,341	-				-0.8
3,392,341	-				+0.2
3,392,341	-				-0.3
3,392,341	-				+0.8
3,392,341	-				+0.2
3,392,355	+				+0.2
3,392,500	+				+0.2
3,392,500	+				+0.1
3,392,500	+				+0.6
3,392,508	-				-1.4
3,392,511	+				-0.9
3,392,561	-				-0.1
3,392,561	-				-1.2
3,392,657	+				-0.9
3,392,709	+		MIT1002_03041	0.10	-0.4
3,392,709	+		MIT1002_03041	0.10	+0.2
3,392,709	+		MIT1002_03041	0.10	+2.1
3,392,709	+		MIT1002_03041	0.10	-0.2
3,392,709	+		MIT1002_03041	0.10	-1.4
3,392,803	+		MIT1002_03041	0.30	+0.8
3,392,803	+		MIT1002_03041	0.30	+0.6
3,392,811	-		MIT1002_03041	0.32	+0.4
3,392,882	+		MIT1002_03041	0.47	+0.7
3,392,882	+		MIT1002_03041	0.47	+0.1
3,392,890	-		MIT1002_03041	0.49	+0.1
3,392,890	-		MIT1002_03041	0.49	-0.3
3,392,890	-		MIT1002_03041	0.49	+0.0
3,392,902	+		MIT1002_03041	0.51	+0.9
3,392,918	+		MIT1002_03041	0.54	+0.7
3,392,924	-		MIT1002_03041	0.56	-0.6
3,392,925	+		MIT1002_03041	0.56	+0.2
3,393,100	+				+0.3
3,393,132	+				-0.1
3,393,140	-				-0.5
3,393,142	+				-1.1
3,393,142	+				-2.2
3,393,150	-				+0.6
3,393,150	-				-0.4
3,393,171	+				-1.3
3,393,172	+				+1.2
3,393,173	+				-0.7
3,393,173	+				+0.0
3,393,181	-				-0.6
3,393,188	+				+0.2
3,393,196	-				-0.6
3,393,196	-				-0.2
3,393,215	+				-2.1
3,393,247	-				+1.2
3,393,310	-				+0.8
3,393,320	-				-0.2
3,393,320	-				-2.2
3,393,330	+				-2.2
3,393,386	+				+0.8
3,393,394	-				-0.3
3,393,400	+				+2.1
3,393,426	-				+0.0
3,393,426	-				+0.3
3,393,426	-				+0.6
3,393,433	-				-0.1
3,393,493	-		MIT1002_03042	0.13	-1.5
3,393,521	-		MIT1002_03042	0.15	+1.2
3,393,521	-		MIT1002_03042	0.15	+0.5
3,393,578	+		MIT1002_03042	0.20	+0.2
3,393,595	+		MIT1002_03042	0.22	+0.1
3,393,600	+		MIT1002_03042	0.22	-0.1
3,393,653	-		MIT1002_03042	0.27	+0.2
3,393,661	+		MIT1002_03042	0.28	+0.8
3,393,696	+		MIT1002_03042	0.31	+0.2
3,393,696	+		MIT1002_03042	0.31	+1.5
3,393,703	-		MIT1002_03042	0.32	+0.1
3,393,736	+		MIT1002_03042	0.35	-0.3
3,393,737	+		MIT1002_03042	0.35	+2.6
3,393,737	+		MIT1002_03042	0.35	+0.6
3,393,744	-		MIT1002_03042	0.36	+0.0
3,393,745	-		MIT1002_03042	0.36	+0.4
3,393,820	+		MIT1002_03042	0.43	-2.4
3,393,828	-		MIT1002_03042	0.43	+0.1
3,393,828	-		MIT1002_03042	0.43	+1.1
3,393,828	-		MIT1002_03042	0.43	+0.1
3,393,894	-		MIT1002_03042	0.49	+0.1
3,393,922	+		MIT1002_03042	0.52	+0.7
3,393,949	+		MIT1002_03042	0.55	+1.2
3,393,955	+		MIT1002_03042	0.55	-0.8
3,393,957	-		MIT1002_03042	0.55	-0.2
3,394,045	+		MIT1002_03042	0.63	+1.0
3,394,087	-		MIT1002_03042	0.67	+0.7