Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03003

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,345,078	+		MIT1002_03002	0.67	-1.8
3,345,254	+		MIT1002_03002	0.76	-0.9
3,345,409	+		MIT1002_03002	0.83	-2.4
3,346,079	+		MIT1002_03003	0.12	-0.6
3,346,271	-		MIT1002_03003	0.19	-0.9
3,346,342	-		MIT1002_03003	0.21	-1.3
3,346,599	-		MIT1002_03003	0.31	-2.4
3,346,685	+		MIT1002_03003	0.34	+0.2
3,346,716	+		MIT1002_03003	0.35	-0.6
3,346,959	-		MIT1002_03003	0.44	-0.8
3,347,043	+		MIT1002_03003	0.48	-1.6
3,347,068	+		MIT1002_03003	0.49	-2.2
3,347,076	-		MIT1002_03003	0.49	-1.6
3,347,473	+		MIT1002_03003	0.64	-1.6
3,347,700	-		MIT1002_03003	0.72	-3.5
3,347,781	+		MIT1002_03003	0.75	-1.2
3,347,799	-		MIT1002_03003	0.76	-1.3
3,347,804	+		MIT1002_03003	0.76	-2.2
3,347,834	+		MIT1002_03003	0.77	-0.8
3,348,087	-		MIT1002_03003	0.87	+1.2
3,348,105	-		MIT1002_03003	0.87	+0.2
3,348,138	+		MIT1002_03003	0.89	-0.3
3,348,202	+				+0.5
3,348,545	+				-2.0
3,348,593	-				-0.0
3,348,593	-				-2.1
3,348,628	-				-1.4
3,348,628	-				+0.4
3,348,710	-				-0.4
3,348,710	-				-1.8
3,348,733	+		MIT1002_03004	0.10	-0.1
3,348,772	-		MIT1002_03004	0.16	-1.7
3,348,828	-		MIT1002_03004	0.23	+0.7
3,348,838	-		MIT1002_03004	0.24	-0.1
3,348,838	-		MIT1002_03004	0.24	-2.7
3,348,838	-		MIT1002_03004	0.24	-0.4
3,348,877	-		MIT1002_03004	0.30	-1.0
3,348,880	-		MIT1002_03004	0.30	+0.2
3,348,923	-		MIT1002_03004	0.36	+1.5
3,348,940	-		MIT1002_03004	0.38	-1.7
3,348,971	+		MIT1002_03004	0.42	-1.3
3,349,004	-		MIT1002_03004	0.47	-1.3
3,349,013	-		MIT1002_03004	0.48	-0.2
3,349,015	+		MIT1002_03004	0.48	+0.2
3,349,023	-		MIT1002_03004	0.49	-2.0
3,349,044	-		MIT1002_03004	0.52	+0.7
3,349,044	-		MIT1002_03004	0.52	+0.1
3,349,062	+		MIT1002_03004	0.54	-1.2
3,349,070	-		MIT1002_03004	0.56	-1.0
3,349,137	+		MIT1002_03004	0.65	-0.1
3,349,167	-		MIT1002_03004	0.69	-0.6
3,349,180	-		MIT1002_03004	0.70	+0.4
3,349,209	+		MIT1002_03004	0.74	+1.2
3,349,233	-		MIT1002_03004	0.77	-0.9
3,349,273	-		MIT1002_03004	0.83	-0.1
3,349,320	-		MIT1002_03004	0.89	-0.5
3,349,330	-				-0.7
3,349,405	-				-1.8