Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02890

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
3,210,394	-				+1.0
3,210,421	+				+0.1
3,210,447	+				-1.3
3,210,509	-				+0.5
3,210,513	+				+0.3
3,210,521	-		MIT1002_02889	0.11	+0.7
3,210,523	+		MIT1002_02889	0.11	+0.5
3,210,531	-		MIT1002_02889	0.13	-0.1
3,210,531	-		MIT1002_02889	0.13	-0.9
3,210,566	-		MIT1002_02889	0.19	+0.1
3,210,683	+		MIT1002_02889	0.39	-1.1
3,210,688	+		MIT1002_02889	0.40	-0.8
3,210,696	-		MIT1002_02889	0.41	+0.0
3,210,696	-		MIT1002_02889	0.41	+0.0
3,210,726	+		MIT1002_02889	0.46	+0.1
3,210,729	-		MIT1002_02889	0.47	-0.6
3,210,734	-		MIT1002_02889	0.48	-0.4
3,210,772	-		MIT1002_02889	0.54	+0.2
3,210,795	-		MIT1002_02889	0.58	+0.1
3,210,827	+		MIT1002_02889	0.64	-1.6
3,210,852	+		MIT1002_02889	0.68	-0.4
3,211,029	+				-1.3
3,211,188	-				-0.6
3,211,195	+				+1.2
3,211,200	+				+0.5
3,211,208	-				+0.4
3,211,347	+				+0.1
3,211,376	+				-2.8
3,211,377	+				+0.2
3,211,384	-				-1.0
3,211,385	-				+0.9
3,211,385	-				-0.1
3,211,390	+				+0.5
3,211,392	+				-1.3
3,211,404	+				-0.8
3,211,412	-				+0.6
3,211,436	+				+0.8
3,211,441	+				+0.2
3,211,449	-				-2.5
3,211,449	-				+0.2
3,211,473	-				-1.0
3,211,473	-				+0.2
3,211,611	-				+0.2
3,211,611	-				-1.2
3,211,611	-				-0.7
3,211,611	-				-1.6
3,211,649	+				+1.1
3,211,733	+		MIT1002_02890	0.12	-0.1
3,211,741	-		MIT1002_02890	0.12	-1.0
3,211,766	+		MIT1002_02890	0.13	+0.8
3,211,771	+		MIT1002_02890	0.13	-0.5
3,211,779	+		MIT1002_02890	0.13	+0.3
3,211,779	-		MIT1002_02890	0.13	-1.5
3,211,786	-		MIT1002_02890	0.14	-0.1
3,211,787	-		MIT1002_02890	0.14	-1.2
3,211,805	+		MIT1002_02890	0.14	-0.3
3,211,823	+		MIT1002_02890	0.15	+0.2
3,211,831	-		MIT1002_02890	0.15	-0.7
3,211,849	+		MIT1002_02890	0.16	-0.6
3,211,861	+		MIT1002_02890	0.16	-0.9
3,211,867	-		MIT1002_02890	0.17	-0.2
3,211,877	+		MIT1002_02890	0.17	+1.5
3,211,884	+		MIT1002_02890	0.17	-1.0
3,211,884	+		MIT1002_02890	0.17	+1.4
3,211,892	-		MIT1002_02890	0.17	+1.2
3,211,904	+		MIT1002_02890	0.18	+0.5
3,211,912	-		MIT1002_02890	0.18	+0.6
3,212,024	+		MIT1002_02890	0.22	-0.0
3,212,134	-		MIT1002_02890	0.26	+1.2
3,212,254	-		MIT1002_02890	0.30	-1.6
3,212,305	+		MIT1002_02890	0.32	-0.9
3,212,313	-		MIT1002_02890	0.32	-0.2
3,212,339	+		MIT1002_02890	0.33	-1.6
3,212,417	-		MIT1002_02890	0.35	-0.6
3,212,443	-		MIT1002_02890	0.36	-3.0
3,212,494	+		MIT1002_02890	0.38	-0.7
3,212,502	-		MIT1002_02890	0.38	+0.5
3,212,534	+		MIT1002_02890	0.39	+0.5
3,212,572	-		MIT1002_02890	0.41	+0.6
3,212,588	+		MIT1002_02890	0.41	+0.3
3,212,645	-		MIT1002_02890	0.43	-2.3
3,212,673	+		MIT1002_02890	0.44	-0.1
3,212,706	+		MIT1002_02890	0.45	+0.1
3,212,714	-		MIT1002_02890	0.46	+0.3
3,212,715	-		MIT1002_02890	0.46	+0.6
3,212,745	-		MIT1002_02890	0.47	-0.2
3,212,761	+		MIT1002_02890	0.47	+0.9
3,212,780	+		MIT1002_02890	0.48	+1.1
3,212,795	+		MIT1002_02890	0.48	+0.3
3,212,926	-		MIT1002_02890	0.53	+0.2
3,212,942	-		MIT1002_02890	0.54	-0.1
3,212,950	+		MIT1002_02890	0.54	-0.4
3,212,970	+		MIT1002_02890	0.55	+0.2
3,213,100	-		MIT1002_02890	0.59	-0.6
3,213,102	-		MIT1002_02890	0.59	+0.5
3,213,147	+		MIT1002_02890	0.61	-0.4
3,213,203	+		MIT1002_02890	0.63	-0.2
3,213,265	-		MIT1002_02890	0.65	+0.2
3,213,302	+		MIT1002_02890	0.66	+0.3
3,213,302	+		MIT1002_02890	0.66	+0.2
3,213,315	+		MIT1002_02890	0.66	+1.4
3,213,328	-		MIT1002_02890	0.67	+0.2
3,213,428	+		MIT1002_02890	0.70	-0.5
3,213,506	+		MIT1002_02890	0.73	+0.0
3,213,506	+		MIT1002_02890	0.73	+0.8
3,213,514	-		MIT1002_02890	0.73	-0.5
3,213,514	-		MIT1002_02890	0.73	+0.6
3,213,520	-		MIT1002_02890	0.73	+0.4
3,213,673	+		MIT1002_02890	0.79	-0.4
3,213,738	+		MIT1002_02890	0.81	-3.3
3,213,830	+		MIT1002_02890	0.84	+0.1
3,213,932	-		MIT1002_02890	0.88	-1.6
3,213,972	-		MIT1002_02890	0.89	-2.6
3,214,010	+				+0.1
3,214,022	-				+1.0
3,214,091	+				+0.7
3,214,157	+				+0.6
3,214,157	+				+0.9
3,214,157	+				+1.0
3,214,157	+				+1.6
3,214,157	+				+0.0
3,214,157	+				+0.6
3,214,157	+				-0.9
3,214,157	+				+1.9
3,214,165	-				+0.2
3,214,165	-				-1.0
3,214,165	-				+1.8
3,214,165	-				+0.2
3,214,165	-				-0.8
3,214,178	+				+0.3
3,214,178	+				-0.4
3,214,186	-				-0.2
3,214,186	-				-1.2
3,214,186	-				-0.4
3,214,186	-				+0.5
3,214,228	+				-1.2
3,214,255	+				-0.3
3,214,276	-				+2.0
3,214,302	-				+0.3
3,214,333	+				-1.9
3,214,333	+				-1.2
3,214,333	+				+0.9
3,214,333	+				-1.1
3,214,333	+				-0.7
3,214,341	-				-0.2
3,214,341	-				-0.4
3,214,341	-				-0.5
3,214,341	-				-0.0
3,214,341	-				-2.1
3,214,341	-				+0.9
3,214,376	+				+0.1
3,214,395	+				-0.1
3,214,486	+				+1.4
3,214,503	+				+0.1
3,214,515	+				+0.4
3,214,556	-				+1.4
3,214,569	+				+0.6
3,214,600	+		MIT1002_02891	0.11	+0.5
3,214,708	+		MIT1002_02891	0.18	-0.8
3,214,716	+		MIT1002_02891	0.18	-0.6
3,214,718	+		MIT1002_02891	0.18	+0.3
3,214,723	+		MIT1002_02891	0.19	-1.7
3,214,750	-		MIT1002_02891	0.21	+1.6
3,214,785	+		MIT1002_02891	0.23	+0.5
3,214,800	-		MIT1002_02891	0.24	+0.4
3,214,867	-		MIT1002_02891	0.28	+0.0
3,215,007	-		MIT1002_02891	0.38	+0.5
3,215,007	-		MIT1002_02891	0.38	+0.2
3,215,119	+		MIT1002_02891	0.45	-0.5
3,215,148	+		MIT1002_02891	0.47	-2.0
3,215,178	-		MIT1002_02891	0.49	+2.8
3,215,178	-		MIT1002_02891	0.49	-1.6
3,215,178	-		MIT1002_02891	0.49	-0.5
3,215,178	-		MIT1002_02891	0.49	+0.6
3,215,275	+		MIT1002_02891	0.55	-1.3