Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02488

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,773,453	+				-1.4
2,773,607	-		MIT1002_02487	0.14	+0.2
2,773,620	+		MIT1002_02487	0.16	-1.6
2,773,628	-		MIT1002_02487	0.17	+1.2
2,773,641	+		MIT1002_02487	0.18	+0.2
2,773,696	+		MIT1002_02487	0.24	+0.1
2,773,696	+		MIT1002_02487	0.24	-0.4
2,773,704	-		MIT1002_02487	0.25	+0.8
2,773,751	-		MIT1002_02487	0.30	-0.1
2,773,754	-		MIT1002_02487	0.31	-0.0
2,773,780	-		MIT1002_02487	0.34	+0.9
2,773,784	+		MIT1002_02487	0.34	+0.9
2,773,817	+		MIT1002_02487	0.38	+1.0
2,773,825	-		MIT1002_02487	0.39	-1.4
2,773,825	-		MIT1002_02487	0.39	-0.1
2,773,825	-		MIT1002_02487	0.39	-0.4
2,773,844	-		MIT1002_02487	0.41	+0.9
2,773,889	+		MIT1002_02487	0.46	+0.3
2,773,894	+		MIT1002_02487	0.46	-1.5
2,774,033	+		MIT1002_02487	0.62	+0.7
2,774,048	-		MIT1002_02487	0.64	-0.4
2,774,083	+		MIT1002_02487	0.67	+0.4
2,774,086	-		MIT1002_02487	0.68	-0.2
2,774,164	+		MIT1002_02487	0.76	+1.8
2,774,164	+		MIT1002_02487	0.76	+1.1
2,774,164	+		MIT1002_02487	0.76	+0.7
2,774,164	+		MIT1002_02487	0.76	+0.6
2,774,173	+		MIT1002_02487	0.77	-0.3
2,774,179	-		MIT1002_02487	0.78	-1.3
2,774,181	+		MIT1002_02487	0.78	+0.6
2,774,183	-		MIT1002_02487	0.79	-1.5
2,774,367	-				+0.9
2,774,367	-				+0.6
2,774,367	-				+1.0
2,774,367	-				-1.1
2,774,367	-				-0.3
2,774,367	-				-1.6
2,774,372	-				-0.2
2,774,389	+				+0.8
2,774,412	+				+0.4
2,774,566	+		MIT1002_02488	0.14	-0.1
2,774,608	-		MIT1002_02488	0.17	+0.2
2,774,608	-		MIT1002_02488	0.17	+0.8
2,774,721	+		MIT1002_02488	0.25	-2.1
2,774,728	-		MIT1002_02488	0.26	+0.6
2,774,761	-		MIT1002_02488	0.28	+0.9
2,774,844	+		MIT1002_02488	0.34	+1.8
2,774,848	+		MIT1002_02488	0.34	+0.7
2,774,936	-		MIT1002_02488	0.40	+1.0
2,774,937	+		MIT1002_02488	0.40	-0.2
2,774,937	+		MIT1002_02488	0.40	+0.9
2,774,945	-		MIT1002_02488	0.41	+0.7
2,774,947	+		MIT1002_02488	0.41	-1.1
2,775,027	+		MIT1002_02488	0.46	+0.1
2,775,044	-		MIT1002_02488	0.48	+1.0
2,775,059	+		MIT1002_02488	0.49	+2.1
2,775,059	+		MIT1002_02488	0.49	+1.2
2,775,067	-		MIT1002_02488	0.49	-1.3
2,775,078	+		MIT1002_02488	0.50	+0.8
2,775,084	-		MIT1002_02488	0.50	-0.2
2,775,086	-		MIT1002_02488	0.50	+0.5
2,775,092	-		MIT1002_02488	0.51	+0.5
2,775,224	+		MIT1002_02488	0.60	+0.3
2,775,281	+		MIT1002_02488	0.64	-0.0
2,775,290	-		MIT1002_02488	0.65	+1.2
2,775,347	+		MIT1002_02488	0.69	+1.0
2,775,362	-		MIT1002_02488	0.70	+0.8
2,775,389	-		MIT1002_02488	0.72	+1.1
2,775,400	-		MIT1002_02488	0.72	-0.5
2,775,401	+		MIT1002_02488	0.72	+0.5
2,775,451	+		MIT1002_02488	0.76	+2.2
2,775,455	-		MIT1002_02488	0.76	+0.1
2,775,455	-		MIT1002_02488	0.76	-0.8
2,775,461	+		MIT1002_02488	0.77	-1.9
2,775,487	-		MIT1002_02488	0.78	+0.6
2,775,524	-		MIT1002_02488	0.81	+0.0
2,775,531	-		MIT1002_02488	0.81	+0.8
2,775,558	-		MIT1002_02488	0.83	+0.8
2,775,567	-		MIT1002_02488	0.84	-0.2
2,775,576	+		MIT1002_02488	0.85	-2.0
2,775,576	+		MIT1002_02488	0.85	+0.1
2,775,584	-		MIT1002_02488	0.85	+1.9
2,775,584	-		MIT1002_02488	0.85	+0.4
2,775,584	-		MIT1002_02488	0.85	+0.7
2,775,628	+		MIT1002_02488	0.88	+1.1
2,775,628	+		MIT1002_02488	0.88	+0.1
2,775,636	-		MIT1002_02488	0.89	-0.7
2,775,689	+				-0.5
2,775,699	+				+1.8
2,775,704	+				+1.0
2,775,705	-				+0.8
2,775,728	+				+1.1
2,775,877	+				-1.4
2,775,967	+				-1.3
2,775,975	-				+0.2
2,776,032	+		MIT1002_02489	0.19	-1.3
2,776,083	+		MIT1002_02489	0.27	-1.1
2,776,124	-		MIT1002_02489	0.34	+0.7
2,776,126	+		MIT1002_02489	0.34	-1.2
2,776,126	+		MIT1002_02489	0.34	-2.4
2,776,126	+		MIT1002_02489	0.34	-0.5
2,776,126	+		MIT1002_02489	0.34	-4.3
2,776,131	+		MIT1002_02489	0.35	-1.8
2,776,239	-		MIT1002_02489	0.53	-1.8
2,776,277	+		MIT1002_02489	0.60	-3.4
2,776,295	-		MIT1002_02489	0.63	-1.4
2,776,318	+		MIT1002_02489	0.67	+0.2
2,776,328	+		MIT1002_02489	0.68	-2.1
2,776,336	-		MIT1002_02489	0.70	-0.1
2,776,444	+		MIT1002_02489	0.88	-1.5
2,776,517	+				-2.8
2,776,517	+				-1.8
2,776,524	-				-1.6
2,776,525	-				-2.9
2,776,525	-				+0.1
2,776,525	-				-1.1
2,776,525	-				-1.1
2,776,653	+				-1.1
2,776,676	-				+2.3
2,776,677	-				+1.0
2,776,687	-				+0.4
2,776,765	+				-0.2
2,776,771	+				-0.4
2,776,779	-				-1.4
2,776,792	+				-0.6