Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02454

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,741,512	-		MIT1002_02453	0.84	+0.4
2,741,534	+		MIT1002_02453	0.85	-0.2
2,741,602	-		MIT1002_02453	0.86	-1.7
2,741,602	-		MIT1002_02453	0.86	-1.7
2,741,621	-		MIT1002_02453	0.87	-0.2
2,741,638	-		MIT1002_02453	0.87	+0.2
2,741,705	+		MIT1002_02453	0.89	+0.0
2,741,813	+				-0.1
2,741,870	+				-1.3
2,741,910	+				-1.4
2,741,972	-				-1.0
2,741,972	-				+0.7
2,741,980	+				-0.5
2,742,063	-				-2.0
2,742,078	-				+0.4
2,742,118	-				-0.7
2,742,124	+				-0.4
2,742,132	-				-1.5
2,742,132	-				+0.4
2,742,465	-				-0.1
2,742,503	+				+0.5
2,742,511	-				+0.0
2,742,546	+				+1.0
2,742,546	+				-0.6
2,742,546	+				+0.0
2,742,554	-				+0.6
2,742,554	-				-1.4
2,742,620	+				-1.0
2,742,747	+		MIT1002_02454	0.10	-0.5
2,742,872	+		MIT1002_02454	0.15	-0.4
2,742,875	-		MIT1002_02454	0.15	+1.2
2,742,880	-		MIT1002_02454	0.15	+0.1
2,742,887	+		MIT1002_02454	0.15	+1.1
2,742,895	-		MIT1002_02454	0.16	-0.5
2,742,932	+		MIT1002_02454	0.17	-0.6
2,742,940	-		MIT1002_02454	0.17	+0.8
2,743,024	-		MIT1002_02454	0.20	-0.1
2,743,078	+		MIT1002_02454	0.23	+0.0
2,743,078	+		MIT1002_02454	0.23	-0.4
2,743,096	-		MIT1002_02454	0.23	+0.6
2,743,119	+		MIT1002_02454	0.24	+0.5
2,743,133	+		MIT1002_02454	0.25	-0.3
2,743,133	+		MIT1002_02454	0.25	+0.5
2,743,138	+		MIT1002_02454	0.25	-0.8
2,743,141	-		MIT1002_02454	0.25	+0.1
2,743,141	-		MIT1002_02454	0.25	-1.3
2,743,141	-		MIT1002_02454	0.25	-0.2
2,743,148	+		MIT1002_02454	0.25	-0.8
2,743,168	+		MIT1002_02454	0.26	+0.6
2,743,222	-		MIT1002_02454	0.28	+0.5
2,743,286	-		MIT1002_02454	0.30	+0.0
2,743,327	+		MIT1002_02454	0.32	-0.7
2,743,327	+		MIT1002_02454	0.32	+1.7
2,743,327	+		MIT1002_02454	0.32	+0.8
2,743,327	+		MIT1002_02454	0.32	-0.6
2,743,327	+		MIT1002_02454	0.32	-0.1
2,743,327	+		MIT1002_02454	0.32	-1.2
2,743,327	+		MIT1002_02454	0.32	-1.0
2,743,327	+		MIT1002_02454	0.32	+2.3
2,743,327	+		MIT1002_02454	0.32	+0.3
2,743,335	-		MIT1002_02454	0.32	-1.1
2,743,335	-		MIT1002_02454	0.32	+0.1
2,743,335	-		MIT1002_02454	0.32	+0.9
2,743,335	-		MIT1002_02454	0.32	+0.6
2,743,335	-		MIT1002_02454	0.32	-0.3
2,743,335	-		MIT1002_02454	0.32	+0.8
2,743,335	-		MIT1002_02454	0.32	-0.5
2,743,335	-		MIT1002_02454	0.32	-0.3
2,743,335	-		MIT1002_02454	0.32	+0.7
2,743,335	-		MIT1002_02454	0.32	-0.2
2,743,336	+		MIT1002_02454	0.32	-0.4
2,743,409	+		MIT1002_02454	0.35	+1.1
2,743,424	+		MIT1002_02454	0.36	-1.4
2,743,439	+		MIT1002_02454	0.36	-1.1
2,743,456	+		MIT1002_02454	0.37	+0.4
2,743,474	+		MIT1002_02454	0.37	-0.7
2,743,482	+		MIT1002_02454	0.38	-2.0
2,743,490	-		MIT1002_02454	0.38	+1.2
2,743,601	+		MIT1002_02454	0.42	-1.1
2,743,601	+		MIT1002_02454	0.42	+0.3
2,743,603	-		MIT1002_02454	0.42	-0.7
2,743,603	-		MIT1002_02454	0.42	+1.7
2,743,608	-		MIT1002_02454	0.43	-0.9
2,743,608	-		MIT1002_02454	0.43	-0.3
2,743,609	-		MIT1002_02454	0.43	+1.0
2,743,652	-		MIT1002_02454	0.44	-0.7
2,743,684	+		MIT1002_02454	0.45	+1.3
2,743,692	+		MIT1002_02454	0.46	+0.8
2,743,692	-		MIT1002_02454	0.46	-1.7
2,743,780	-		MIT1002_02454	0.49	-0.2
2,743,780	-		MIT1002_02454	0.49	-1.7
2,743,784	+		MIT1002_02454	0.49	-1.7
2,743,786	-		MIT1002_02454	0.49	-0.4
2,743,850	-		MIT1002_02454	0.52	-0.0
2,743,868	+		MIT1002_02454	0.52	+0.3
2,743,879	+		MIT1002_02454	0.53	-0.4
2,743,879	+		MIT1002_02454	0.53	+0.3
2,743,887	-		MIT1002_02454	0.53	-0.7
2,743,887	-		MIT1002_02454	0.53	+0.8
2,743,887	-		MIT1002_02454	0.53	+0.5
2,743,970	+		MIT1002_02454	0.56	-1.6
2,743,972	+		MIT1002_02454	0.56	+0.3
2,743,972	+		MIT1002_02454	0.56	-0.1
2,743,972	+		MIT1002_02454	0.56	+1.2
2,743,972	+		MIT1002_02454	0.56	-1.0
2,743,972	+		MIT1002_02454	0.56	+0.2
2,743,972	+		MIT1002_02454	0.56	+0.3
2,743,972	+		MIT1002_02454	0.56	+1.8
2,743,972	+		MIT1002_02454	0.56	+0.3
2,743,980	-		MIT1002_02454	0.57	+0.1
2,743,980	-		MIT1002_02454	0.57	+0.4
2,743,996	+		MIT1002_02454	0.57	-0.8
2,743,999	-		MIT1002_02454	0.57	-0.5
2,744,004	-		MIT1002_02454	0.57	-0.9
2,744,061	+		MIT1002_02454	0.60	+1.0
2,744,061	+		MIT1002_02454	0.60	-0.1
2,744,068	-		MIT1002_02454	0.60	+0.6
2,744,069	-		MIT1002_02454	0.60	-1.6
2,744,069	-		MIT1002_02454	0.60	-1.1
2,744,069	-		MIT1002_02454	0.60	-0.6
2,744,075	-		MIT1002_02454	0.60	+3.7
2,744,075	-		MIT1002_02454	0.60	+0.1
2,744,141	-		MIT1002_02454	0.63	+0.5
2,744,142	+		MIT1002_02454	0.63	+0.6
2,744,167	-		MIT1002_02454	0.64	-0.7
2,744,247	-		MIT1002_02454	0.67	+1.2
2,744,323	+		MIT1002_02454	0.70	-0.6
2,744,358	-		MIT1002_02454	0.71	-0.5
2,744,418	+		MIT1002_02454	0.73	-0.3
2,744,488	+		MIT1002_02454	0.76	-0.1
2,744,516	+		MIT1002_02454	0.77	-0.5
2,744,524	-		MIT1002_02454	0.77	+0.3
2,744,621	+		MIT1002_02454	0.81	+0.7
2,744,652	+		MIT1002_02454	0.82	+1.0
2,744,667	+		MIT1002_02454	0.83	-0.2
2,744,778	-		MIT1002_02454	0.87	-1.0
2,744,807	+		MIT1002_02454	0.88	+0.9
2,744,836	+		MIT1002_02454	0.89	-0.1
2,744,937	-				+0.9
2,745,022	-				+0.0
2,745,062	-				+0.4
2,745,114	-				-0.5
2,745,118	-				+4.4
2,745,118	-				-1.0
2,745,157	-				-0.5
2,745,346	+				-1.2
2,745,411	+				-0.6
2,745,444	+				+0.4
2,745,466	+				-0.5
2,745,466	+				+0.4
2,745,471	+				-1.3
2,745,472	-				+1.9
2,745,482	-				-1.1
2,745,601	+		MIT1002_02455	0.13	+1.9
2,745,626	-		MIT1002_02455	0.14	-1.8
2,745,674	-		MIT1002_02455	0.17	+1.5
2,745,721	+		MIT1002_02455	0.19	+0.8
2,745,751	-		MIT1002_02455	0.21	-2.1
2,745,768	-		MIT1002_02455	0.21	-2.7
2,745,781	-		MIT1002_02455	0.22	-0.4
2,745,897	+		MIT1002_02455	0.28	+0.7
2,745,897	+		MIT1002_02455	0.28	+0.8
2,745,902	+		MIT1002_02455	0.28	-0.0
2,745,905	-		MIT1002_02455	0.29	+1.9
2,745,905	-		MIT1002_02455	0.29	-0.5
2,745,915	-		MIT1002_02455	0.29	+0.2
2,745,915	-		MIT1002_02455	0.29	+1.0
2,745,915	-		MIT1002_02455	0.29	-0.2
2,745,975	-		MIT1002_02455	0.32	+0.5
2,746,029	+		MIT1002_02455	0.35	+1.1
2,746,047	+		MIT1002_02455	0.36	-0.5