Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02421

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,700,908	-		MIT1002_02419	0.48	+0.2
2,700,908	-		MIT1002_02419	0.48	+1.3
2,700,942	-		MIT1002_02419	0.53	-1.5
2,701,037	+		MIT1002_02419	0.68	+0.3
2,701,135	-		MIT1002_02419	0.82	-2.4
2,701,176	+		MIT1002_02419	0.88	+0.1
2,701,184	-		MIT1002_02419	0.90	-0.3
2,701,184	-		MIT1002_02419	0.90	-0.7
2,701,184	-		MIT1002_02419	0.90	+1.1
2,701,208	-				-0.1
2,701,299	+				+0.4
2,701,318	-				+1.3
2,701,340	+				+0.3
2,701,340	+				-0.8
2,701,348	-		MIT1002_02420	0.11	+0.6
2,701,433	+		MIT1002_02420	0.25	+0.2
2,701,441	-		MIT1002_02420	0.27	+1.0
2,701,481	+		MIT1002_02420	0.34	+1.2
2,701,486	+		MIT1002_02420	0.34	-0.8
2,701,489	-		MIT1002_02420	0.35	-0.4
2,701,494	-		MIT1002_02420	0.36	-0.7
2,701,503	-		MIT1002_02420	0.37	+0.9
2,701,523	+		MIT1002_02420	0.41	+0.5
2,701,523	+		MIT1002_02420	0.41	+0.3
2,701,525	+		MIT1002_02420	0.41	-1.5
2,701,559	+		MIT1002_02420	0.47	-0.4
2,701,561	+		MIT1002_02420	0.47	-1.1
2,701,561	+		MIT1002_02420	0.47	-0.1
2,701,569	-		MIT1002_02420	0.48	-0.8
2,701,596	+		MIT1002_02420	0.53	+0.9
2,701,675	+		MIT1002_02420	0.66	+1.8
2,701,718	-		MIT1002_02420	0.73	-1.2
2,701,749	+		MIT1002_02420	0.79	-2.1
2,701,790	-		MIT1002_02420	0.86	-0.3
2,701,870	+				-0.1
2,701,986	-				-1.7
2,701,986	-				-0.1
2,702,008	+				-0.3
2,702,008	+				-0.8
2,702,008	+				-0.8
2,702,138	+		MIT1002_02421	0.13	-2.1
2,702,138	+		MIT1002_02421	0.13	-1.6
2,702,274	+		MIT1002_02421	0.21	+1.1
2,702,299	-		MIT1002_02421	0.22	-0.5
2,702,317	+		MIT1002_02421	0.23	-1.9
2,702,317	+		MIT1002_02421	0.23	+0.0
2,702,317	+		MIT1002_02421	0.23	-2.0
2,702,317	+		MIT1002_02421	0.23	+1.6
2,702,317	+		MIT1002_02421	0.23	-0.3
2,702,317	+		MIT1002_02421	0.23	+0.7
2,702,317	+		MIT1002_02421	0.23	+0.5
2,702,317	+		MIT1002_02421	0.23	+0.9
2,702,317	+		MIT1002_02421	0.23	+0.0
2,702,322	+		MIT1002_02421	0.23	-0.2
2,702,325	-		MIT1002_02421	0.24	-0.1
2,702,325	-		MIT1002_02421	0.24	-0.7
2,702,325	-		MIT1002_02421	0.24	-0.7
2,702,325	-		MIT1002_02421	0.24	-0.7
2,702,325	-		MIT1002_02421	0.24	-0.1
2,702,325	-		MIT1002_02421	0.24	-1.8
2,702,325	-		MIT1002_02421	0.24	+0.6
2,702,325	-		MIT1002_02421	0.24	-1.3
2,702,325	-		MIT1002_02421	0.24	-0.2
2,702,325	-		MIT1002_02421	0.24	-0.8
2,702,325	-		MIT1002_02421	0.24	-0.2
2,702,330	-		MIT1002_02421	0.24	+1.0
2,702,330	-		MIT1002_02421	0.24	+0.5
2,702,335	-		MIT1002_02421	0.24	+0.0
2,702,380	+		MIT1002_02421	0.27	-1.0
2,702,386	+		MIT1002_02421	0.27	-1.8
2,702,416	+		MIT1002_02421	0.29	+0.0
2,702,492	+		MIT1002_02421	0.33	-0.3
2,702,586	-		MIT1002_02421	0.38	+1.0
2,702,609	-		MIT1002_02421	0.40	+0.0
2,702,671	+		MIT1002_02421	0.43	-0.7
2,702,679	-		MIT1002_02421	0.44	-0.6
2,702,679	-		MIT1002_02421	0.44	+0.3
2,702,679	-		MIT1002_02421	0.44	-0.3
2,702,688	+		MIT1002_02421	0.44	-0.8
2,702,714	-		MIT1002_02421	0.46	-2.0
2,702,830	-		MIT1002_02421	0.52	+1.3
2,702,830	-		MIT1002_02421	0.52	-0.4
2,702,851	+		MIT1002_02421	0.53	+1.0
2,702,902	+		MIT1002_02421	0.56	-0.5
2,702,905	-		MIT1002_02421	0.56	-0.7
2,702,945	+		MIT1002_02421	0.59	+1.7
2,702,960	+		MIT1002_02421	0.59	+0.8
2,703,056	+		MIT1002_02421	0.65	+0.2
2,703,116	-		MIT1002_02421	0.68	+0.4
2,703,141	+		MIT1002_02421	0.70	-0.4
2,703,149	-		MIT1002_02421	0.70	+0.0
2,703,149	-		MIT1002_02421	0.70	+0.6
2,703,266	+		MIT1002_02421	0.77	-0.8
2,703,274	-		MIT1002_02421	0.77	-0.7
2,703,333	-		MIT1002_02421	0.80	+0.4
2,703,350	-		MIT1002_02421	0.81	+0.5
2,703,371	+		MIT1002_02421	0.83	-0.9
2,703,379	-		MIT1002_02421	0.83	+0.3
2,703,390	-		MIT1002_02421	0.84	-0.8
2,703,396	+		MIT1002_02421	0.84	+0.2
2,703,420	+		MIT1002_02421	0.85	+0.4
2,703,459	+		MIT1002_02421	0.88	-0.4
2,703,467	-		MIT1002_02421	0.88	-0.4
2,703,467	-		MIT1002_02421	0.88	-0.5
2,703,467	-		MIT1002_02421	0.88	-0.8
2,703,467	-		MIT1002_02421	0.88	-0.1
2,703,467	-		MIT1002_02421	0.88	+0.3
2,703,467	-		MIT1002_02421	0.88	+2.0
2,703,482	-		MIT1002_02421	0.89	-0.3
2,703,503	-				+1.3
2,703,503	-				+0.4
2,703,517	+				+0.6
2,703,517	+				+1.6
2,703,517	+				+0.7
2,703,517	+				+1.1
2,703,525	-				+0.7
2,703,525	-				+0.1
2,703,570	+				-0.1
2,703,594	-				-0.3
2,703,596	+				+1.0
2,703,604	-				-1.4
2,703,625	-				+1.4
2,703,734	+				+0.1
2,703,780	+				-0.0
2,703,780	+				+0.5
2,703,780	+				+0.1
2,703,858	+				-0.2
2,703,907	+		MIT1002_02422	0.10	-0.7
2,703,915	-		MIT1002_02422	0.11	-0.5
2,703,915	-		MIT1002_02422	0.11	+0.1
2,703,915	-		MIT1002_02422	0.11	-1.7
2,703,925	-		MIT1002_02422	0.11	-1.1
2,703,939	+		MIT1002_02422	0.12	-0.6
2,703,958	-		MIT1002_02422	0.13	+0.3
2,703,992	+		MIT1002_02422	0.15	-1.8
2,704,022	+		MIT1002_02422	0.17	+1.2
2,704,024	-		MIT1002_02422	0.17	-0.4
2,704,037	-		MIT1002_02422	0.17	-3.2
2,704,051	+		MIT1002_02422	0.18	+1.0
2,704,070	+		MIT1002_02422	0.19	-0.9
2,704,071	-		MIT1002_02422	0.19	+0.1
2,704,131	-		MIT1002_02422	0.22	-1.4
2,704,200	+		MIT1002_02422	0.26	-0.4
2,704,208	-		MIT1002_02422	0.27	+0.7
2,704,208	-		MIT1002_02422	0.27	+1.3
2,704,208	-		MIT1002_02422	0.27	-0.2
2,704,233	+		MIT1002_02422	0.28	+0.2
2,704,287	+		MIT1002_02422	0.31	+0.2
2,704,362	+		MIT1002_02422	0.35	-0.6
2,704,443	+		MIT1002_02422	0.39	-1.3
2,704,451	-		MIT1002_02422	0.40	-0.6
2,704,474	+		MIT1002_02422	0.41	-0.6
2,704,474	-		MIT1002_02422	0.41	-2.2
2,704,482	-		MIT1002_02422	0.41	+0.3
2,704,484	-		MIT1002_02422	0.41	+0.5
2,704,496	+		MIT1002_02422	0.42	-1.2
2,704,504	-		MIT1002_02422	0.42	-1.0
2,704,567	+		MIT1002_02422	0.46	-0.1
2,704,637	-		MIT1002_02422	0.50	+0.0
2,704,665	+		MIT1002_02422	0.51	+0.1
2,704,673	-		MIT1002_02422	0.52	-2.3