Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02340

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,604,973	+		MIT1002_02337	0.87	-0.5
2,604,973	+		MIT1002_02337	0.87	+0.4
2,605,009	+				-2.7
2,605,009	+				+1.1
2,605,010	+				+1.3
2,605,095	-				-1.7
2,605,095	-				+0.6
2,605,127	+				-0.6
2,605,141	-				-0.1
2,605,188	-				-1.7
2,605,220	-				-0.5
2,605,354	+		MIT1002_02338	0.32	+1.3
2,605,360	+		MIT1002_02338	0.34	+0.6
2,605,368	-		MIT1002_02338	0.37	+2.2
2,605,408	-		MIT1002_02338	0.50	-1.2
2,605,452	+		MIT1002_02338	0.65	-1.8
2,605,491	+		MIT1002_02338	0.78	-1.1
2,605,504	-		MIT1002_02338	0.82	-0.3
2,605,528	-				-0.2
2,605,528	-				-0.0
2,605,530	+				+0.3
2,605,538	-				+0.2
2,605,728	+		MIT1002_02339	0.72	+0.7
2,605,728	+		MIT1002_02339	0.72	-1.5
2,605,728	+		MIT1002_02339	0.72	+1.4
2,605,728	+		MIT1002_02339	0.72	-0.8
2,605,728	+		MIT1002_02339	0.72	-0.9
2,605,736	-		MIT1002_02339	0.75	-2.1
2,605,736	-		MIT1002_02339	0.75	-1.2
2,605,736	-		MIT1002_02339	0.75	-2.3
2,605,736	-		MIT1002_02339	0.75	-1.8
2,605,738	+		MIT1002_02339	0.76	-0.2
2,605,738	+		MIT1002_02339	0.76	+0.3
2,605,738	+		MIT1002_02339	0.76	+0.9
2,605,870	+				+0.7
2,605,879	-				-0.3
2,605,880	+				-1.1
2,605,880	+				+1.9
2,605,882	+				-1.2
2,605,888	-				+0.5
2,605,929	+				-1.3
2,605,947	+				+0.1
2,605,991	-		MIT1002_02340	0.15	-1.8
2,606,033	-		MIT1002_02340	0.21	-0.3
2,606,043	-		MIT1002_02340	0.23	-0.1
2,606,075	+		MIT1002_02340	0.28	-1.3
2,606,083	-		MIT1002_02340	0.29	-0.1
2,606,083	-		MIT1002_02340	0.29	+0.2
2,606,102	-		MIT1002_02340	0.32	+0.5
2,606,117	+		MIT1002_02340	0.34	+0.1
2,606,162	+		MIT1002_02340	0.41	-0.0
2,606,179	+		MIT1002_02340	0.43	+0.2
2,606,179	+		MIT1002_02340	0.43	+1.0
2,606,182	-		MIT1002_02340	0.44	+1.9
2,606,188	+		MIT1002_02340	0.45	+0.8
2,606,191	+		MIT1002_02340	0.45	-2.5
2,606,194	-		MIT1002_02340	0.46	-0.1
2,606,198	-		MIT1002_02340	0.46	+1.1
2,606,285	+		MIT1002_02340	0.60	+0.8
2,606,293	-		MIT1002_02340	0.61	-0.1
2,606,304	+		MIT1002_02340	0.62	-0.3
2,606,308	+		MIT1002_02340	0.63	-0.1
2,606,308	+		MIT1002_02340	0.63	+0.6
2,606,308	+		MIT1002_02340	0.63	+0.7
2,606,308	+		MIT1002_02340	0.63	+0.3
2,606,308	+		MIT1002_02340	0.63	+0.3
2,606,308	+		MIT1002_02340	0.63	-2.0
2,606,308	+		MIT1002_02340	0.63	+0.0
2,606,308	+		MIT1002_02340	0.63	-0.8
2,606,308	+		MIT1002_02340	0.63	-0.3
2,606,308	+		MIT1002_02340	0.63	-0.1
2,606,308	+		MIT1002_02340	0.63	-2.6
2,606,315	-		MIT1002_02340	0.64	-2.2
2,606,316	-		MIT1002_02340	0.64	+0.3
2,606,316	-		MIT1002_02340	0.64	+0.2
2,606,316	-		MIT1002_02340	0.64	+0.1
2,606,316	-		MIT1002_02340	0.64	+0.1
2,606,316	-		MIT1002_02340	0.64	-0.1
2,606,316	-		MIT1002_02340	0.64	-0.2
2,606,362	-		MIT1002_02340	0.71	-0.6
2,606,397	-		MIT1002_02340	0.77	-1.6
2,606,403	+		MIT1002_02340	0.77	-0.4
2,606,403	+		MIT1002_02340	0.77	-0.0
2,606,411	-		MIT1002_02340	0.79	-0.0
2,606,416	-		MIT1002_02340	0.79	-0.4
2,606,465	+		MIT1002_02340	0.87	+0.2
2,606,473	-		MIT1002_02340	0.88	+0.3
2,606,540	+				+0.4
2,606,590	+				-0.7
2,606,606	+				-0.2
2,606,606	+				+0.6
2,606,636	+				-0.1
2,606,644	-				+0.6
2,606,686	-				-1.5
2,606,712	+				+0.4
2,606,720	-				+1.4
2,606,934	-		MIT1002_02341	0.15	-0.0
2,607,003	-		MIT1002_02341	0.18	+0.2
2,607,019	+		MIT1002_02341	0.19	-0.4
2,607,191	+		MIT1002_02341	0.26	+0.1
2,607,213	-		MIT1002_02341	0.26	+1.2
2,607,312	+		MIT1002_02341	0.30	-0.8
2,607,312	+		MIT1002_02341	0.30	-1.0
2,607,312	+		MIT1002_02341	0.30	-0.6
2,607,320	-		MIT1002_02341	0.31	+0.3
2,607,474	+		MIT1002_02341	0.37	+1.3
2,607,482	-		MIT1002_02341	0.37	-2.4
2,607,513	-		MIT1002_02341	0.39	-0.6
2,607,513	-		MIT1002_02341	0.39	-0.0
2,607,524	-		MIT1002_02341	0.39	+0.4