Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02256

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,510,239	+				-0.6
2,510,239	+				-0.6
2,510,260	-				-2.2
2,510,260	-				-1.2
2,510,299	-				-0.2
2,510,342	+				-2.7
2,510,348	+				-0.9
2,510,348	+				-0.6
2,510,348	+				+1.0
2,510,348	+				+0.6
2,510,350	+				-0.7
2,510,350	-				-1.9
2,510,356	-				-0.6
2,510,356	-				+0.9
2,510,356	-				+0.7
2,510,357	-				-0.1
2,510,393	+		MIT1002_02255	0.13	+1.0
2,510,395	+		MIT1002_02255	0.13	+0.2
2,510,395	+		MIT1002_02255	0.13	+1.2
2,510,395	+		MIT1002_02255	0.13	-0.3
2,510,395	+		MIT1002_02255	0.13	+1.4
2,510,395	+		MIT1002_02255	0.13	-1.9
2,510,403	+		MIT1002_02255	0.14	-0.4
2,510,403	-		MIT1002_02255	0.14	+1.4
2,510,403	-		MIT1002_02255	0.14	-0.1
2,510,403	-		MIT1002_02255	0.14	+0.2
2,510,417	-		MIT1002_02255	0.15	+1.8
2,510,549	+		MIT1002_02255	0.31	-0.7
2,510,551	-		MIT1002_02255	0.31	-0.6
2,510,562	-		MIT1002_02255	0.32	-0.3
2,510,588	+		MIT1002_02255	0.35	-0.4
2,510,623	+		MIT1002_02255	0.40	-0.3
2,510,631	+		MIT1002_02255	0.40	+0.6
2,510,631	-		MIT1002_02255	0.40	-0.8
2,510,655	-		MIT1002_02255	0.43	+0.1
2,510,655	-		MIT1002_02255	0.43	+0.6
2,510,687	-		MIT1002_02255	0.47	-1.3
2,510,724	+		MIT1002_02255	0.51	-0.5
2,510,792	+		MIT1002_02255	0.59	+0.2
2,510,792	+		MIT1002_02255	0.59	+0.6
2,510,800	-		MIT1002_02255	0.60	-2.5
2,510,806	-		MIT1002_02255	0.61	-0.0
2,510,814	+		MIT1002_02255	0.62	-1.4
2,510,835	-		MIT1002_02255	0.64	+0.3
2,510,849	-		MIT1002_02255	0.66	-2.0
2,510,895	-		MIT1002_02255	0.71	-1.1
2,510,932	+		MIT1002_02255	0.76	+0.8
2,510,932	+		MIT1002_02255	0.76	-1.5
2,510,940	-		MIT1002_02255	0.77	-0.5
2,511,014	+		MIT1002_02255	0.85	+0.3
2,511,022	-		MIT1002_02255	0.86	-0.2
2,511,044	+		MIT1002_02255	0.89	+0.3
2,511,045	+		MIT1002_02255	0.89	-0.2
2,511,090	-				+0.3
2,511,141	-				+0.1
2,511,163	+				+0.1
2,511,163	+				-0.3
2,511,202	+				-0.6
2,511,204	+		MIT1002_02256	0.10	-1.0
2,511,207	-		MIT1002_02256	0.11	+0.8
2,511,209	+		MIT1002_02256	0.12	+0.3
2,511,209	+		MIT1002_02256	0.12	-0.5
2,511,212	+		MIT1002_02256	0.12	-0.0
2,511,212	-		MIT1002_02256	0.12	-0.2
2,511,244	-		MIT1002_02256	0.21	+0.7
2,511,360	+		MIT1002_02256	0.53	+0.2
2,511,366	-		MIT1002_02256	0.54	+1.3
2,511,366	-		MIT1002_02256	0.54	+0.4
2,511,368	-		MIT1002_02256	0.55	+0.8
2,511,368	-		MIT1002_02256	0.55	-1.5
2,511,368	-		MIT1002_02256	0.55	+0.7
2,511,368	-		MIT1002_02256	0.55	+0.2
2,511,409	-		MIT1002_02256	0.66	+0.7
2,511,523	-				-0.7
2,511,537	-				+0.9
2,511,537	-				-0.7
2,511,537	-				-0.2
2,511,537	-				-1.0
2,511,648	-		MIT1002_02257	0.26	-1.1
2,511,655	-		MIT1002_02257	0.28	-0.1
2,511,690	+		MIT1002_02257	0.38	+0.2
2,511,848	-		MIT1002_02257	0.79	-0.1
2,511,864	-		MIT1002_02257	0.84	+1.3
2,511,959	+				-0.5
2,512,312	+		MIT1002_02258	0.50	-0.9
2,512,388	-		MIT1002_02258	0.60	-0.4
2,512,404	+		MIT1002_02258	0.62	-3.7
2,512,404	+		MIT1002_02258	0.62	+0.0
2,512,404	+		MIT1002_02258	0.62	-1.5
2,512,456	-		MIT1002_02258	0.68	+0.8
2,512,523	-		MIT1002_02258	0.77	-1.3
2,512,534	+		MIT1002_02258	0.78	-1.4