Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02096

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,357,308	+		MIT1002_02095	0.36	-0.9
2,357,316	-		MIT1002_02095	0.37	+1.3
2,357,316	-		MIT1002_02095	0.37	+0.1
2,357,316	-		MIT1002_02095	0.37	-2.6
2,357,316	-		MIT1002_02095	0.37	-0.2
2,357,340	+		MIT1002_02095	0.38	-0.5
2,357,375	-		MIT1002_02095	0.41	+0.2
2,357,448	-		MIT1002_02095	0.46	-0.5
2,357,500	+		MIT1002_02095	0.49	-0.9
2,357,519	+		MIT1002_02095	0.51	-0.2
2,357,658	+		MIT1002_02095	0.60	+0.4
2,357,682	-		MIT1002_02095	0.62	+0.5
2,357,721	+		MIT1002_02095	0.64	-1.5
2,357,722	+		MIT1002_02095	0.64	-0.0
2,357,722	+		MIT1002_02095	0.64	-0.2
2,357,775	+		MIT1002_02095	0.68	-1.6
2,357,783	-		MIT1002_02095	0.69	-1.3
2,357,783	-		MIT1002_02095	0.69	+0.7
2,357,783	-		MIT1002_02095	0.69	+0.2
2,357,783	-		MIT1002_02095	0.69	+2.6
2,357,892	+		MIT1002_02095	0.76	-0.4
2,357,916	-		MIT1002_02095	0.78	+0.9
2,357,922	-		MIT1002_02095	0.78	+0.5
2,357,928	+		MIT1002_02095	0.79	-0.8
2,358,023	+		MIT1002_02095	0.85	+1.3
2,358,026	-		MIT1002_02095	0.85	+0.5
2,358,031	-		MIT1002_02095	0.86	+0.4
2,358,062	+		MIT1002_02095	0.88	+0.7
2,358,186	+				-2.3
2,358,223	+				+0.6
2,358,228	+				-1.0
2,358,379	+		MIT1002_02096	0.10	+3.0
2,358,398	+		MIT1002_02096	0.13	+1.0
2,358,403	+		MIT1002_02096	0.13	-1.2
2,358,513	+		MIT1002_02096	0.27	+0.1
2,358,547	+		MIT1002_02096	0.31	+1.0
2,358,724	+		MIT1002_02096	0.52	+0.3
2,358,751	+		MIT1002_02096	0.55	+0.9
2,358,829	-		MIT1002_02096	0.65	-0.3
2,358,888	+		MIT1002_02096	0.72	-0.4
2,358,901	-		MIT1002_02096	0.73	+0.2
2,358,955	+		MIT1002_02096	0.80	+0.5
2,358,963	-		MIT1002_02096	0.81	-0.1
2,358,974	+		MIT1002_02096	0.82	+0.5
2,358,982	-		MIT1002_02096	0.83	-1.0
2,359,086	-				+0.4
2,359,164	+				-1.8
2,359,305	-		MIT1002_02097	0.20	+1.7
2,359,376	+		MIT1002_02097	0.29	+1.0
2,359,379	-		MIT1002_02097	0.29	+1.1
2,359,517	-		MIT1002_02097	0.47	+0.3
2,359,537	+		MIT1002_02097	0.49	-0.3
2,359,547	+		MIT1002_02097	0.51	-1.5
2,359,547	+		MIT1002_02097	0.51	-0.3
2,359,555	-		MIT1002_02097	0.52	+1.0
2,359,555	-		MIT1002_02097	0.52	+0.1
2,359,555	-		MIT1002_02097	0.52	-0.8
2,359,623	-		MIT1002_02097	0.60	-1.2
2,359,641	+		MIT1002_02097	0.62	-0.9
2,359,695	+		MIT1002_02097	0.69	-0.3
2,359,740	+		MIT1002_02097	0.75	-0.8
2,359,744	-		MIT1002_02097	0.76	-0.5
2,359,758	-		MIT1002_02097	0.77	-0.1
2,359,758	-		MIT1002_02097	0.77	-0.0
2,359,758	-		MIT1002_02097	0.77	+1.1
2,359,758	-		MIT1002_02097	0.77	+1.0
2,359,793	-		MIT1002_02097	0.82	+1.0
2,359,863	+				-0.3
2,359,896	+				-0.9
2,360,036	+				+1.7
2,360,102	-		MIT1002_02098	0.16	+0.5
2,360,112	-		MIT1002_02098	0.17	+1.8
2,360,114	+		MIT1002_02098	0.18	-1.0
2,360,122	-		MIT1002_02098	0.19	-0.7
2,360,122	-		MIT1002_02098	0.19	+0.5