Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02090

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,351,586	+		MIT1002_02088	0.45	-0.7
2,351,594	-		MIT1002_02088	0.46	+0.5
2,351,598	-		MIT1002_02088	0.46	+0.8
2,351,674	+		MIT1002_02088	0.54	-0.2
2,351,682	-		MIT1002_02088	0.55	-0.1
2,351,682	-		MIT1002_02088	0.55	-0.9
2,351,682	-		MIT1002_02088	0.55	+0.2
2,351,682	-		MIT1002_02088	0.55	+1.5
2,351,707	-		MIT1002_02088	0.57	-1.2
2,351,811	+		MIT1002_02088	0.68	+0.2
2,351,910	+		MIT1002_02088	0.77	+0.9
2,351,975	+		MIT1002_02088	0.84	+1.6
2,352,020	+		MIT1002_02088	0.88	-1.3
2,352,122	+				-0.5
2,352,130	-				-1.3
2,352,278	-		MIT1002_02089	0.54	+0.9
2,352,556	+				+1.0
2,352,557	+				+0.9
2,352,565	-				-0.8
2,352,565	-				+0.4
2,352,662	-		MIT1002_02090	0.16	-3.2
2,352,662	-		MIT1002_02090	0.16	+0.8
2,352,727	-		MIT1002_02090	0.20	-0.8
2,352,753	-		MIT1002_02090	0.22	+0.9
2,352,828	+		MIT1002_02090	0.27	-0.2
2,352,876	+		MIT1002_02090	0.30	+0.7
2,352,876	+		MIT1002_02090	0.30	-1.5
2,352,876	+		MIT1002_02090	0.30	+0.6
2,352,884	-		MIT1002_02090	0.31	+1.3
2,352,884	-		MIT1002_02090	0.31	+0.6
2,352,884	-		MIT1002_02090	0.31	-0.4
2,352,884	-		MIT1002_02090	0.31	-0.2
2,352,888	+		MIT1002_02090	0.31	-0.1
2,352,894	-		MIT1002_02090	0.31	+0.1
2,352,921	+		MIT1002_02090	0.33	+0.3
2,353,020	-		MIT1002_02090	0.39	-0.2
2,353,130	+		MIT1002_02090	0.47	+8.5
2,353,154	-		MIT1002_02090	0.48	+0.6
2,353,154	-		MIT1002_02090	0.48	+0.3
2,353,299	+		MIT1002_02090	0.58	-1.2
2,353,300	+		MIT1002_02090	0.58	+0.0
2,353,312	-		MIT1002_02090	0.59	+0.2
2,353,406	+		MIT1002_02090	0.65	+0.6
2,353,413	+		MIT1002_02090	0.65	-0.4
2,353,514	-		MIT1002_02090	0.72	-1.3
2,353,545	-		MIT1002_02090	0.74	+0.5
2,353,706	+		MIT1002_02090	0.84	-0.1
2,353,714	-		MIT1002_02090	0.85	-0.3
2,353,714	-		MIT1002_02090	0.85	+0.8
2,353,714	-		MIT1002_02090	0.85	-1.1
2,353,728	-		MIT1002_02090	0.86	+0.0
2,353,794	+				+0.8
2,353,917	-				+0.8
2,353,987	-				-0.6
2,353,987	-				-2.2
2,354,029	+				+0.0
2,354,039	-		MIT1002_02091	0.11	-1.7
2,354,075	+		MIT1002_02091	0.21	+1.0
2,354,150	+		MIT1002_02091	0.41	-1.0
2,354,157	+		MIT1002_02091	0.43	-0.5
2,354,172	-		MIT1002_02091	0.47	+0.3
2,354,193	+		MIT1002_02091	0.53	+0.6
2,354,193	+		MIT1002_02091	0.53	-1.9
2,354,201	-		MIT1002_02091	0.56	+0.1
2,354,245	-		MIT1002_02091	0.68	-0.1
2,354,250	+		MIT1002_02091	0.69	-0.3
2,354,283	-		MIT1002_02091	0.78	-1.4
2,354,433	-				-1.6
2,354,444	-				+0.6
2,354,447	+				-0.0
2,354,454	-				-0.3
2,354,459	-				+0.5
2,354,488	+		MIT1002_02092	0.11	+0.7
2,354,529	+		MIT1002_02092	0.15	+1.0
2,354,536	-		MIT1002_02092	0.16	-0.5
2,354,541	-		MIT1002_02092	0.16	+0.6
2,354,619	-		MIT1002_02092	0.23	+0.1
2,354,619	-		MIT1002_02092	0.23	+0.0
2,354,659	+		MIT1002_02092	0.27	-0.8
2,354,762	+		MIT1002_02092	0.37	-3.0
2,354,762	-		MIT1002_02092	0.37	-0.7
2,354,781	-		MIT1002_02092	0.39	+0.2
2,354,796	+		MIT1002_02092	0.40	+0.1
2,354,812	+		MIT1002_02092	0.42	+0.2
2,354,886	-		MIT1002_02092	0.49	+0.7