Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02062

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,321,326	+				-1.2
2,321,334	-				+0.3
2,321,418	+		MIT1002_02060	0.20	-0.6
2,321,474	-		MIT1002_02060	0.36	-0.3
2,321,482	-		MIT1002_02060	0.39	-1.2
2,321,608	+		MIT1002_02060	0.75	-0.6
2,321,666	-				+2.0
2,321,676	-				+0.5
2,321,704	-				+0.1
2,321,739	-				+0.0
2,321,817	+				+0.3
2,321,926	+		MIT1002_02061	0.37	+0.1
2,321,933	+		MIT1002_02061	0.39	-0.8
2,321,933	+		MIT1002_02061	0.39	+0.2
2,321,934	-		MIT1002_02061	0.39	-1.0
2,321,955	-		MIT1002_02061	0.45	+0.1
2,322,007	-		MIT1002_02061	0.58	+0.6
2,322,096	-		MIT1002_02061	0.80	-0.4
2,322,106	+		MIT1002_02061	0.83	-0.8
2,322,106	+		MIT1002_02061	0.83	+0.8
2,322,131	-		MIT1002_02061	0.89	-0.3
2,322,138	-				+0.1
2,322,191	+				+0.7
2,322,241	-				-0.7
2,322,367	+				+0.7
2,322,367	+				-0.7
2,322,369	+				-1.8
2,322,375	-				-0.7
2,322,403	+				-0.2
2,322,607	+		MIT1002_02062	0.17	-0.6
2,322,738	+		MIT1002_02062	0.24	+1.2
2,322,748	+		MIT1002_02062	0.24	+0.0
2,322,756	-		MIT1002_02062	0.25	+1.0
2,322,900	-		MIT1002_02062	0.32	+0.4
2,323,070	+		MIT1002_02062	0.41	-0.7
2,323,078	-		MIT1002_02062	0.42	+0.4
2,323,116	+		MIT1002_02062	0.44	+1.1
2,323,117	-		MIT1002_02062	0.44	-0.3
2,323,219	-		MIT1002_02062	0.49	-0.1
2,323,251	-		MIT1002_02062	0.51	-0.1
2,323,306	-		MIT1002_02062	0.54	-1.0
2,323,335	-		MIT1002_02062	0.56	+1.2
2,323,358	+		MIT1002_02062	0.57	-0.1
2,323,437	-		MIT1002_02062	0.61	-1.3
2,323,437	-		MIT1002_02062	0.61	-0.1
2,323,437	-		MIT1002_02062	0.61	-1.2
2,323,458	-		MIT1002_02062	0.62	-1.0
2,323,480	+		MIT1002_02062	0.64	-0.8
2,323,628	+		MIT1002_02062	0.72	+0.3
2,323,636	-		MIT1002_02062	0.72	+0.6
2,323,778	+		MIT1002_02062	0.80	-1.1
2,323,778	+		MIT1002_02062	0.80	+0.1
2,323,873	+		MIT1002_02062	0.85	-0.8
2,323,873	+		MIT1002_02062	0.85	+0.1
2,323,881	-		MIT1002_02062	0.85	-2.5
2,323,881	-		MIT1002_02062	0.85	+0.4
2,323,916	-		MIT1002_02062	0.87	-0.2
2,323,918	+		MIT1002_02062	0.87	+0.7
2,323,918	+		MIT1002_02062	0.87	-0.2
2,323,921	-		MIT1002_02062	0.87	-0.2
2,323,926	-		MIT1002_02062	0.88	-0.4
2,323,939	+		MIT1002_02062	0.88	+0.2
2,324,030	+				-0.4
2,324,038	-				-0.6
2,324,038	-				-0.4
2,324,151	+				+1.4
2,324,152	-				+0.8
2,324,152	-				-0.6
2,324,170	-				-0.2
2,324,179	+				-1.9
2,324,179	+				+0.4
2,324,179	+				-0.1
2,324,179	+				+0.3
2,324,179	+				+0.5
2,324,187	-				-0.6
2,324,187	-				+0.4
2,324,187	-				-0.3
2,324,221	+				+1.3
2,324,236	+				-0.2
2,324,246	+				-1.9
2,324,246	+				+0.2
2,324,246	+				+0.8
2,324,256	+				+1.0
2,324,320	-		MIT1002_02063	0.13	-0.3
2,324,404	+		MIT1002_02063	0.20	+0.6
2,324,404	+		MIT1002_02063	0.20	+0.3
2,324,404	+		MIT1002_02063	0.20	+1.0
2,324,509	-		MIT1002_02063	0.28	+0.3
2,324,517	+		MIT1002_02063	0.28	+1.4
2,324,551	+		MIT1002_02063	0.31	-0.8
2,324,551	+		MIT1002_02063	0.31	+0.8
2,324,586	-		MIT1002_02063	0.33	+0.7
2,324,627	-		MIT1002_02063	0.37	+0.5
2,324,646	-		MIT1002_02063	0.38	+0.3
2,324,665	+		MIT1002_02063	0.40	-1.3
2,324,675	+		MIT1002_02063	0.40	+0.7
2,324,706	+		MIT1002_02063	0.43	+0.1
2,324,706	+		MIT1002_02063	0.43	+0.7
2,324,797	+		MIT1002_02063	0.50	-0.1
2,324,797	+		MIT1002_02063	0.50	+0.1
2,324,805	-		MIT1002_02063	0.50	-0.6
2,324,819	+		MIT1002_02063	0.51	+1.6
2,324,819	+		MIT1002_02063	0.51	-0.7
2,324,838	-		MIT1002_02063	0.53	-0.3
2,324,838	-		MIT1002_02063	0.53	+0.5
2,324,874	+		MIT1002_02063	0.56	+1.9
2,324,874	+		MIT1002_02063	0.56	-1.0
2,324,874	+		MIT1002_02063	0.56	+1.6
2,324,882	-		MIT1002_02063	0.56	-0.3
2,324,916	-		MIT1002_02063	0.59	+0.5