Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02060

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,320,358	+		MIT1002_02057	0.87	+0.6
2,320,371	+		MIT1002_02057	0.88	+0.0
2,320,371	+		MIT1002_02057	0.88	+0.9
2,320,372	+		MIT1002_02057	0.88	+2.7
2,320,394	-		MIT1002_02057	0.89	+0.4
2,320,394	-		MIT1002_02057	0.89	+0.0
2,320,401	-		MIT1002_02057	0.90	-1.1
2,320,518	-				-0.6
2,320,603	-				-2.0
2,320,633	+				-0.7
2,320,681	-				+0.0
2,320,691	+				+0.0
2,320,699	+				-0.1
2,320,712	-				-0.7
2,320,750	+				+0.3
2,320,763	-				-0.1
2,320,763	-				+1.0
2,320,763	-				-0.6
2,320,795	+				-0.8
2,320,817	-				+0.4
2,320,824	+				-1.1
2,320,824	+				+0.6
2,320,832	-				+1.5
2,320,888	+		MIT1002_02058	0.31	-1.2
2,320,918	-		MIT1002_02058	0.46	+0.6
2,320,942	+		MIT1002_02058	0.58	+0.6
2,321,056	-				-0.7
2,321,157	-		MIT1002_02059	0.43	+0.1
2,321,166	+		MIT1002_02059	0.46	-0.8
2,321,168	+		MIT1002_02059	0.47	-0.8
2,321,176	-		MIT1002_02059	0.50	-0.2
2,321,176	-		MIT1002_02059	0.50	+0.1
2,321,326	+				-1.2
2,321,334	-				+0.3
2,321,418	+		MIT1002_02060	0.20	-0.6
2,321,474	-		MIT1002_02060	0.36	-0.3
2,321,482	-		MIT1002_02060	0.39	-1.2
2,321,608	+		MIT1002_02060	0.75	-0.6
2,321,666	-				+2.0
2,321,676	-				+0.5
2,321,704	-				+0.1
2,321,739	-				+0.0
2,321,817	+				+0.3
2,321,926	+		MIT1002_02061	0.37	+0.1
2,321,933	+		MIT1002_02061	0.39	-0.8
2,321,933	+		MIT1002_02061	0.39	+0.2
2,321,934	-		MIT1002_02061	0.39	-1.0
2,321,955	-		MIT1002_02061	0.45	+0.1
2,322,007	-		MIT1002_02061	0.58	+0.6
2,322,096	-		MIT1002_02061	0.80	-0.4
2,322,106	+		MIT1002_02061	0.83	-0.8
2,322,106	+		MIT1002_02061	0.83	+0.8
2,322,131	-		MIT1002_02061	0.89	-0.3
2,322,138	-				+0.1
2,322,191	+				+0.7
2,322,241	-				-0.7
2,322,367	+				+0.7
2,322,367	+				-0.7
2,322,369	+				-1.8
2,322,375	-				-0.7
2,322,403	+				-0.2
2,322,607	+		MIT1002_02062	0.17	-0.6