Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02018

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,259,680	-				-0.3
2,259,696	+				+0.7
2,259,915	-		MIT1002_02017	0.13	+0.6
2,260,065	+		MIT1002_02017	0.31	+0.3
2,260,065	+		MIT1002_02017	0.31	+0.1
2,260,073	-		MIT1002_02017	0.32	+0.5
2,260,073	-		MIT1002_02017	0.32	-0.2
2,260,136	-		MIT1002_02017	0.39	+0.7
2,260,188	+		MIT1002_02017	0.45	-1.3
2,260,196	-		MIT1002_02017	0.46	+0.2
2,260,246	+		MIT1002_02017	0.52	-1.2
2,260,246	+		MIT1002_02017	0.52	+0.7
2,260,256	+		MIT1002_02017	0.53	+1.3
2,260,280	+		MIT1002_02017	0.56	-1.1
2,260,288	-		MIT1002_02017	0.57	+0.7
2,260,345	-		MIT1002_02017	0.63	-1.7
2,260,345	-		MIT1002_02017	0.63	-0.7
2,260,365	+		MIT1002_02017	0.66	-0.4
2,260,395	-		MIT1002_02017	0.69	+0.0
2,260,424	-		MIT1002_02017	0.73	-0.5
2,260,442	+		MIT1002_02017	0.75	+0.2
2,260,442	+		MIT1002_02017	0.75	+1.3
2,260,450	-		MIT1002_02017	0.76	-1.7
2,260,450	-		MIT1002_02017	0.76	-0.6
2,260,478	+		MIT1002_02017	0.79	-0.0
2,260,563	+		MIT1002_02017	0.89	-1.1
2,260,563	+		MIT1002_02017	0.89	-0.6
2,260,563	+		MIT1002_02017	0.89	-0.6
2,260,571	-		MIT1002_02017	0.90	+1.7
2,260,571	-		MIT1002_02017	0.90	+0.8
2,260,668	-				+1.3
2,260,673	-				+1.0
2,260,738	-		MIT1002_02018	0.13	+0.9
2,260,773	-		MIT1002_02018	0.20	+0.8
2,260,775	-		MIT1002_02018	0.20	+2.6
2,260,812	+		MIT1002_02018	0.27	-2.3
2,260,820	-		MIT1002_02018	0.29	-0.2
2,260,895	+		MIT1002_02018	0.43	+0.6
2,260,902	+		MIT1002_02018	0.44	+1.0
2,260,916	-		MIT1002_02018	0.47	-0.3
2,260,930	-		MIT1002_02018	0.50	+0.6
2,260,973	+		MIT1002_02018	0.58	+1.1
2,260,981	-		MIT1002_02018	0.59	+0.9
2,261,007	-		MIT1002_02018	0.64	-0.2
2,261,014	+		MIT1002_02018	0.66	-0.5
2,261,152	+				-0.2
2,261,160	-				-0.6
2,261,209	-				+0.3
2,261,409	-				-0.3
2,261,409	-				+1.7
2,261,518	+				-0.5
2,261,526	-				-2.8
2,261,609	+				-1.4
2,261,619	-				-0.8
2,261,630	-				+1.2
2,261,641	-				+0.7
2,261,761	+				-2.8
2,261,761	+				-0.1
2,261,761	+				+0.1
2,261,769	-				+1.0
2,261,769	-				-0.4
2,261,769	-				-0.8
2,261,769	-				-0.3
2,261,769	-				-0.4
2,261,769	-				-1.7
2,261,804	+				+0.4
2,261,819	+				+1.2
2,261,819	+				+0.6
2,261,857	+		MIT1002_02020	0.13	-0.2
2,261,867	+		MIT1002_02020	0.14	-0.2
2,261,987	-		MIT1002_02020	0.24	-1.4
2,262,033	-		MIT1002_02020	0.28	-0.4
2,262,047	+		MIT1002_02020	0.30	-0.2
2,262,047	+		MIT1002_02020	0.30	-0.2
2,262,055	-		MIT1002_02020	0.30	-0.9
2,262,055	-		MIT1002_02020	0.30	-2.0
2,262,085	+		MIT1002_02020	0.33	-0.1
2,262,086	+		MIT1002_02020	0.33	-0.5
2,262,093	-		MIT1002_02020	0.34	+0.9