Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01961

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,188,126	+		MIT1002_01960	0.51	-0.7
2,188,188	+		MIT1002_01960	0.54	-0.6
2,188,193	+		MIT1002_01960	0.54	+0.1
2,188,193	+		MIT1002_01960	0.54	+0.0
2,188,198	+		MIT1002_01960	0.54	+0.3
2,188,201	-		MIT1002_01960	0.54	+0.4
2,188,211	-		MIT1002_01960	0.55	-0.3
2,188,540	-		MIT1002_01960	0.72	-2.9
2,188,548	+		MIT1002_01960	0.72	-0.1
2,188,550	-		MIT1002_01960	0.72	+3.0
2,188,574	+		MIT1002_01960	0.74	+0.8
2,188,650	-		MIT1002_01960	0.78	+0.7
2,188,650	-		MIT1002_01960	0.78	-0.4
2,188,654	+		MIT1002_01960	0.78	+0.1
2,188,654	-		MIT1002_01960	0.78	-2.0
2,188,744	+		MIT1002_01960	0.82	+0.0
2,188,752	-		MIT1002_01960	0.83	-0.6
2,188,752	-		MIT1002_01960	0.83	-0.0
2,188,752	-		MIT1002_01960	0.83	-0.0
2,188,766	-		MIT1002_01960	0.84	+0.4
2,188,776	-		MIT1002_01960	0.84	+0.4
2,188,791	-		MIT1002_01960	0.85	-0.6
2,188,839	+		MIT1002_01960	0.87	-0.0
2,188,954	-				-1.2
2,188,966	+				+1.2
2,188,971	-				+1.0
2,188,974	+				+0.1
2,188,974	-				+1.3
2,188,984	-				-0.7
2,188,984	-				-1.0
2,188,986	+				+0.2
2,188,989	-				+1.1
2,188,994	-				+0.1
2,188,994	-				-0.2
2,189,013	+				-0.1
2,189,037	+				-0.6
2,189,046	-				-0.8
2,189,121	+				+0.7
2,189,143	+				+0.4
2,189,207	-				-0.4
2,189,225	+				-0.3
2,189,356	-		MIT1002_01961	0.16	-0.4
2,189,404	-		MIT1002_01961	0.19	-0.3
2,189,536	+		MIT1002_01961	0.28	-0.6
2,189,622	+		MIT1002_01961	0.34	-0.7
2,189,622	+		MIT1002_01961	0.34	+1.0
2,189,658	+		MIT1002_01961	0.36	-0.9
2,189,676	-		MIT1002_01961	0.37	-0.2
2,189,712	+		MIT1002_01961	0.40	+0.6
2,189,712	+		MIT1002_01961	0.40	+0.9
2,189,717	+		MIT1002_01961	0.40	+0.8
2,189,720	-		MIT1002_01961	0.40	-0.8
2,189,720	-		MIT1002_01961	0.40	-1.7
2,189,787	+		MIT1002_01961	0.45	+0.4
2,189,809	+		MIT1002_01961	0.46	+0.2
2,189,998	+		MIT1002_01961	0.59	-0.9
2,190,048	-		MIT1002_01961	0.62	-0.6
2,190,200	+		MIT1002_01961	0.73	-1.3
2,190,281	+		MIT1002_01961	0.78	-2.0
2,190,305	+		MIT1002_01961	0.80	+0.3
2,190,306	+		MIT1002_01961	0.80	-0.5
2,190,344	-		MIT1002_01961	0.82	-0.1
2,190,352	+		MIT1002_01961	0.83	-1.4
2,190,352	+		MIT1002_01961	0.83	-0.8
2,190,360	-		MIT1002_01961	0.83	+1.0
2,190,362	+		MIT1002_01961	0.84	-1.0
2,190,362	+		MIT1002_01961	0.84	-0.0
2,190,370	-		MIT1002_01961	0.84	-0.1
2,190,372	-		MIT1002_01961	0.84	-0.8
2,190,397	+		MIT1002_01961	0.86	-0.2
2,190,653	-				-0.8
2,190,717	+				-0.7
2,190,717	+				+1.4
2,190,820	-		MIT1002_01962	0.13	+0.4
2,190,821	+		MIT1002_01962	0.13	-0.3
2,190,861	-		MIT1002_01962	0.15	+0.6
2,190,894	+		MIT1002_01962	0.17	-1.4
2,190,906	+		MIT1002_01962	0.18	-0.5
2,190,914	-		MIT1002_01962	0.18	+0.2
2,190,914	-		MIT1002_01962	0.18	-0.2
2,190,914	-		MIT1002_01962	0.18	-0.1
2,190,914	-		MIT1002_01962	0.18	+0.3
2,190,914	-		MIT1002_01962	0.18	+1.3
2,190,951	+		MIT1002_01962	0.20	-0.1
2,190,961	+		MIT1002_01962	0.21	-0.7
2,191,032	-		MIT1002_01962	0.25	+0.2
2,191,038	+		MIT1002_01962	0.25	+0.4
2,191,122	-		MIT1002_01962	0.30	+0.6
2,191,150	+		MIT1002_01962	0.32	-0.6
2,191,197	-		MIT1002_01962	0.35	-0.6
2,191,287	-		MIT1002_01962	0.40	+0.1
2,191,295	-		MIT1002_01962	0.41	-0.6
2,191,295	-		MIT1002_01962	0.41	-2.0
2,191,341	-		MIT1002_01962	0.43	-0.6
2,191,380	-		MIT1002_01962	0.46	-0.1
2,191,544	-		MIT1002_01962	0.55	-2.1
2,191,545	-		MIT1002_01962	0.55	+0.6
2,191,566	-		MIT1002_01962	0.57	-0.3
2,191,566	-		MIT1002_01962	0.57	+0.3
2,191,568	+		MIT1002_01962	0.57	-1.0