Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01960

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,186,238	-		MIT1002_01959	0.62	-0.6
2,186,269	+		MIT1002_01959	0.63	-0.3
2,186,274	+		MIT1002_01959	0.63	+0.6
2,186,292	-		MIT1002_01959	0.64	+1.8
2,186,292	-		MIT1002_01959	0.64	-3.7
2,186,297	-		MIT1002_01959	0.65	-0.4
2,186,376	+		MIT1002_01959	0.69	-2.2
2,186,406	+		MIT1002_01959	0.70	+0.1
2,186,465	+		MIT1002_01959	0.73	+0.7
2,186,465	+		MIT1002_01959	0.73	-0.1
2,186,465	+		MIT1002_01959	0.73	-0.6
2,186,465	+		MIT1002_01959	0.73	+0.2
2,186,465	+		MIT1002_01959	0.73	+0.5
2,186,465	+		MIT1002_01959	0.73	+0.0
2,186,473	-		MIT1002_01959	0.74	-0.8
2,186,475	+		MIT1002_01959	0.74	+0.1
2,186,475	+		MIT1002_01959	0.74	+0.9
2,186,486	+		MIT1002_01959	0.74	-0.3
2,186,500	-		MIT1002_01959	0.75	-1.8
2,186,564	-		MIT1002_01959	0.78	+0.8
2,186,698	+		MIT1002_01959	0.85	-0.7
2,186,706	-		MIT1002_01959	0.86	-0.8
2,186,706	-		MIT1002_01959	0.86	-0.1
2,186,727	+		MIT1002_01959	0.87	-1.8
2,186,737	+		MIT1002_01959	0.87	+0.0
2,186,767	+		MIT1002_01959	0.89	+0.3
2,186,821	-				+0.8
2,186,821	-				+0.1
2,186,821	-				+0.6
2,186,821	-				-1.2
2,186,821	-				+1.1
2,186,821	-				-1.0
2,186,824	+				+1.3
2,186,873	+				-0.5
2,186,881	-				+0.4
2,186,892	-				-2.2
2,186,913	-				+1.3
2,186,913	-				+1.2
2,186,950	+				+0.3
2,186,958	-				+0.4
2,187,067	+				-0.4
2,187,072	+				+1.1
2,187,075	-				+0.1
2,187,168	+				-0.0
2,187,213	+				-0.6
2,187,274	-				+0.1
2,187,277	+				+0.2
2,187,279	-				+1.5
2,187,390	+		MIT1002_01960	0.13	+1.0
2,187,396	-		MIT1002_01960	0.13	-0.6
2,187,478	+		MIT1002_01960	0.17	+1.6
2,187,478	+		MIT1002_01960	0.17	-1.2
2,187,478	+		MIT1002_01960	0.17	+0.1
2,187,486	-		MIT1002_01960	0.18	+0.3
2,187,495	+		MIT1002_01960	0.18	-0.2
2,187,503	-		MIT1002_01960	0.18	-0.8
2,187,541	+		MIT1002_01960	0.20	-0.2
2,187,549	-		MIT1002_01960	0.21	+2.4
2,187,549	-		MIT1002_01960	0.21	-0.2
2,187,549	-		MIT1002_01960	0.21	+0.2
2,187,549	-		MIT1002_01960	0.21	+0.2
2,187,633	+		MIT1002_01960	0.25	-0.6
2,187,638	+		MIT1002_01960	0.25	-1.8
2,187,640	-		MIT1002_01960	0.26	+0.1
2,187,665	+		MIT1002_01960	0.27	-1.6
2,187,700	-		MIT1002_01960	0.29	+0.4
2,187,746	+		MIT1002_01960	0.31	-0.3
2,187,746	+		MIT1002_01960	0.31	-1.1
2,187,746	+		MIT1002_01960	0.31	-0.2
2,187,746	+		MIT1002_01960	0.31	+1.7
2,187,749	-		MIT1002_01960	0.31	+0.4
2,187,788	-		MIT1002_01960	0.33	+0.1
2,187,831	-		MIT1002_01960	0.35	+1.6
2,187,869	-		MIT1002_01960	0.37	-0.2
2,187,881	+		MIT1002_01960	0.38	+0.0
2,187,913	-		MIT1002_01960	0.40	-1.3
2,187,927	-		MIT1002_01960	0.40	+0.6
2,188,002	+		MIT1002_01960	0.44	+0.1
2,188,010	+		MIT1002_01960	0.45	-0.3
2,188,010	-		MIT1002_01960	0.45	-1.4
2,188,010	-		MIT1002_01960	0.45	-0.3
2,188,037	-		MIT1002_01960	0.46	-1.3
2,188,103	+		MIT1002_01960	0.49	+0.3
2,188,126	+		MIT1002_01960	0.51	-0.7
2,188,188	+		MIT1002_01960	0.54	-0.6
2,188,193	+		MIT1002_01960	0.54	+0.1
2,188,193	+		MIT1002_01960	0.54	+0.0
2,188,198	+		MIT1002_01960	0.54	+0.3
2,188,201	-		MIT1002_01960	0.54	+0.4
2,188,211	-		MIT1002_01960	0.55	-0.3
2,188,540	-		MIT1002_01960	0.72	-2.9
2,188,548	+		MIT1002_01960	0.72	-0.1
2,188,550	-		MIT1002_01960	0.72	+3.0
2,188,574	+		MIT1002_01960	0.74	+0.8
2,188,650	-		MIT1002_01960	0.78	+0.7
2,188,650	-		MIT1002_01960	0.78	-0.4
2,188,654	+		MIT1002_01960	0.78	+0.1
2,188,654	-		MIT1002_01960	0.78	-2.0
2,188,744	+		MIT1002_01960	0.82	+0.0
2,188,752	-		MIT1002_01960	0.83	-0.6
2,188,752	-		MIT1002_01960	0.83	-0.0
2,188,752	-		MIT1002_01960	0.83	-0.0
2,188,766	-		MIT1002_01960	0.84	+0.4
2,188,776	-		MIT1002_01960	0.84	+0.4
2,188,791	-		MIT1002_01960	0.85	-0.6
2,188,839	+		MIT1002_01960	0.87	-0.0
2,188,954	-				-1.2
2,188,966	+				+1.2
2,188,971	-				+1.0
2,188,974	+				+0.1
2,188,974	-				+1.3
2,188,984	-				-0.7
2,188,984	-				-1.0
2,188,986	+				+0.2
2,188,989	-				+1.1
2,188,994	-				+0.1
2,188,994	-				-0.2
2,189,013	+				-0.1
2,189,037	+				-0.6
2,189,046	-				-0.8
2,189,121	+				+0.7
2,189,143	+				+0.4
2,189,207	-				-0.4
2,189,225	+				-0.3
2,189,356	-		MIT1002_01961	0.16	-0.4
2,189,404	-		MIT1002_01961	0.19	-0.3
2,189,536	+		MIT1002_01961	0.28	-0.6
2,189,622	+		MIT1002_01961	0.34	-0.7
2,189,622	+		MIT1002_01961	0.34	+1.0
2,189,658	+		MIT1002_01961	0.36	-0.9
2,189,676	-		MIT1002_01961	0.37	-0.2
2,189,712	+		MIT1002_01961	0.40	+0.6
2,189,712	+		MIT1002_01961	0.40	+0.9
2,189,717	+		MIT1002_01961	0.40	+0.8
2,189,720	-		MIT1002_01961	0.40	-0.8
2,189,720	-		MIT1002_01961	0.40	-1.7
2,189,787	+		MIT1002_01961	0.45	+0.4
2,189,809	+		MIT1002_01961	0.46	+0.2
2,189,998	+		MIT1002_01961	0.59	-0.9
2,190,048	-		MIT1002_01961	0.62	-0.6