Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01959

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,184,041	-				+0.1
2,184,068	-				+0.3
2,184,101	-		MIT1002_01958	0.10	+1.6
2,184,101	-		MIT1002_01958	0.10	-0.3
2,184,101	-		MIT1002_01958	0.10	-0.4
2,184,318	+		MIT1002_01958	0.34	+0.6
2,184,337	-		MIT1002_01958	0.36	-1.1
2,184,342	-		MIT1002_01958	0.37	+0.2
2,184,399	+		MIT1002_01958	0.43	+0.1
2,184,555	+		MIT1002_01958	0.60	-0.9
2,184,594	+		MIT1002_01958	0.65	+0.3
2,184,594	+		MIT1002_01958	0.65	-1.8
2,184,596	+		MIT1002_01958	0.65	+0.1
2,184,630	-		MIT1002_01958	0.69	-0.2
2,184,738	-		MIT1002_01958	0.81	-1.7
2,184,770	-		MIT1002_01958	0.84	+0.1
2,184,797	-		MIT1002_01958	0.87	-1.8
2,184,818	-		MIT1002_01958	0.90	-2.4
2,184,820	+		MIT1002_01958	0.90	+0.3
2,184,859	+				-1.4
2,184,866	+				+1.1
2,184,874	-				+0.6
2,184,878	+				-0.3
2,184,886	-				+0.4
2,184,907	+				-1.0
2,184,907	+				+0.3
2,185,077	-				-0.2
2,185,089	+				+1.2
2,185,090	-				-0.8
2,185,113	-				-0.4
2,185,117	+				+0.2
2,185,117	+				+0.2
2,185,117	+				+2.3
2,185,120	-				+2.5
2,185,122	+				-0.1
2,185,123	-				-0.7
2,185,132	+				-0.0
2,185,295	+		MIT1002_01959	0.13	+1.3
2,185,301	+		MIT1002_01959	0.14	+0.4
2,185,303	-		MIT1002_01959	0.14	+0.2
2,185,311	+		MIT1002_01959	0.14	+0.6
2,185,314	-		MIT1002_01959	0.14	+1.6
2,185,321	+		MIT1002_01959	0.15	-1.5
2,185,324	-		MIT1002_01959	0.15	-2.4
2,185,437	+		MIT1002_01959	0.21	+0.6
2,185,459	+		MIT1002_01959	0.22	-2.4
2,185,506	+		MIT1002_01959	0.24	+0.7
2,185,506	+		MIT1002_01959	0.24	-0.0
2,185,519	-		MIT1002_01959	0.25	+0.1
2,185,525	-		MIT1002_01959	0.25	+0.1
2,185,547	-		MIT1002_01959	0.26	+0.8
2,185,627	+		MIT1002_01959	0.30	-0.3
2,185,758	-		MIT1002_01959	0.37	+0.4
2,185,760	+		MIT1002_01959	0.37	+0.2
2,185,760	+		MIT1002_01959	0.37	-1.1
2,185,768	-		MIT1002_01959	0.38	+1.0
2,185,782	+		MIT1002_01959	0.38	+0.7
2,185,782	+		MIT1002_01959	0.38	-0.9
2,185,837	-		MIT1002_01959	0.41	-0.1
2,185,897	+		MIT1002_01959	0.44	-0.2
2,185,897	-		MIT1002_01959	0.44	+1.4
2,185,947	-		MIT1002_01959	0.47	-0.7
2,186,004	+		MIT1002_01959	0.50	-0.4
2,186,068	-		MIT1002_01959	0.53	-1.0
2,186,109	+		MIT1002_01959	0.55	-3.6
2,186,238	-		MIT1002_01959	0.62	-0.6
2,186,269	+		MIT1002_01959	0.63	-0.3
2,186,274	+		MIT1002_01959	0.63	+0.6
2,186,292	-		MIT1002_01959	0.64	+1.8
2,186,292	-		MIT1002_01959	0.64	-3.7
2,186,297	-		MIT1002_01959	0.65	-0.4
2,186,376	+		MIT1002_01959	0.69	-2.2
2,186,406	+		MIT1002_01959	0.70	+0.1
2,186,465	+		MIT1002_01959	0.73	+0.7
2,186,465	+		MIT1002_01959	0.73	-0.1
2,186,465	+		MIT1002_01959	0.73	-0.6
2,186,465	+		MIT1002_01959	0.73	+0.2
2,186,465	+		MIT1002_01959	0.73	+0.5
2,186,465	+		MIT1002_01959	0.73	+0.0
2,186,473	-		MIT1002_01959	0.74	-0.8
2,186,475	+		MIT1002_01959	0.74	+0.1
2,186,475	+		MIT1002_01959	0.74	+0.9
2,186,486	+		MIT1002_01959	0.74	-0.3
2,186,500	-		MIT1002_01959	0.75	-1.8
2,186,564	-		MIT1002_01959	0.78	+0.8
2,186,698	+		MIT1002_01959	0.85	-0.7
2,186,706	-		MIT1002_01959	0.86	-0.8
2,186,706	-		MIT1002_01959	0.86	-0.1
2,186,727	+		MIT1002_01959	0.87	-1.8
2,186,737	+		MIT1002_01959	0.87	+0.0
2,186,767	+		MIT1002_01959	0.89	+0.3
2,186,821	-				+0.8
2,186,821	-				+0.1
2,186,821	-				+0.6
2,186,821	-				-1.2
2,186,821	-				+1.1
2,186,821	-				-1.0
2,186,824	+				+1.3
2,186,873	+				-0.5
2,186,881	-				+0.4
2,186,892	-				-2.2
2,186,913	-				+1.3
2,186,913	-				+1.2
2,186,950	+				+0.3
2,186,958	-				+0.4
2,187,067	+				-0.4
2,187,072	+				+1.1
2,187,075	-				+0.1
2,187,168	+				-0.0
2,187,213	+				-0.6
2,187,274	-				+0.1
2,187,277	+				+0.2
2,187,279	-				+1.5
2,187,390	+		MIT1002_01960	0.13	+1.0
2,187,396	-		MIT1002_01960	0.13	-0.6
2,187,478	+		MIT1002_01960	0.17	+1.6
2,187,478	+		MIT1002_01960	0.17	-1.2
2,187,478	+		MIT1002_01960	0.17	+0.1
2,187,486	-		MIT1002_01960	0.18	+0.3
2,187,495	+		MIT1002_01960	0.18	-0.2
2,187,503	-		MIT1002_01960	0.18	-0.8
2,187,541	+		MIT1002_01960	0.20	-0.2
2,187,549	-		MIT1002_01960	0.21	+2.4
2,187,549	-		MIT1002_01960	0.21	-0.2
2,187,549	-		MIT1002_01960	0.21	+0.2
2,187,549	-		MIT1002_01960	0.21	+0.2
2,187,633	+		MIT1002_01960	0.25	-0.6
2,187,638	+		MIT1002_01960	0.25	-1.8
2,187,640	-		MIT1002_01960	0.26	+0.1
2,187,665	+		MIT1002_01960	0.27	-1.6
2,187,700	-		MIT1002_01960	0.29	+0.4
2,187,746	+		MIT1002_01960	0.31	-0.3
2,187,746	+		MIT1002_01960	0.31	-1.1
2,187,746	+		MIT1002_01960	0.31	-0.2
2,187,746	+		MIT1002_01960	0.31	+1.7
2,187,749	-		MIT1002_01960	0.31	+0.4
2,187,788	-		MIT1002_01960	0.33	+0.1
2,187,831	-		MIT1002_01960	0.35	+1.6
2,187,869	-		MIT1002_01960	0.37	-0.2
2,187,881	+		MIT1002_01960	0.38	+0.0
2,187,913	-		MIT1002_01960	0.40	-1.3
2,187,927	-		MIT1002_01960	0.40	+0.6