Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01938

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
2,150,784	+		MIT1002_01937	0.22	-1.4
2,150,810	+		MIT1002_01937	0.25	-0.3
2,150,929	-		MIT1002_01937	0.37	-0.6
2,150,956	+		MIT1002_01937	0.40	+1.5
2,150,956	-		MIT1002_01937	0.40	+0.8
2,150,956	-		MIT1002_01937	0.40	-0.3
2,151,133	+		MIT1002_01937	0.58	+0.8
2,151,141	-		MIT1002_01937	0.59	+0.3
2,151,141	-		MIT1002_01937	0.59	+0.4
2,151,185	+		MIT1002_01937	0.63	-0.7
2,151,198	-		MIT1002_01937	0.65	+0.2
2,151,210	-		MIT1002_01937	0.66	-0.2
2,151,242	-		MIT1002_01937	0.69	-2.8
2,151,289	+		MIT1002_01937	0.74	-0.7
2,151,305	+		MIT1002_01937	0.76	-0.2
2,151,351	+		MIT1002_01937	0.81	+0.1
2,151,455	-				-0.7
2,151,470	-				-1.8
2,151,470	-				-0.2
2,151,489	-				-1.1
2,151,499	-				-1.4
2,151,509	+				+0.0
2,151,543	+				+0.5
2,151,619	+				+0.4
2,151,619	+				-0.4
2,151,621	-				+0.7
2,151,678	+				+0.3
2,151,724	+		MIT1002_01938	0.12	-0.0
2,151,725	+		MIT1002_01938	0.12	-0.7
2,151,728	+		MIT1002_01938	0.12	+1.5
2,151,736	-		MIT1002_01938	0.13	+1.1
2,151,793	-		MIT1002_01938	0.20	+0.2
2,151,893	-		MIT1002_01938	0.31	+1.3
2,151,929	+		MIT1002_01938	0.35	-0.2
2,151,984	+		MIT1002_01938	0.42	+1.7
2,151,991	+		MIT1002_01938	0.43	+1.1
2,151,992	-		MIT1002_01938	0.43	+1.9
2,151,992	-		MIT1002_01938	0.43	-0.4
2,152,004	-		MIT1002_01938	0.44	-0.2
2,152,011	-		MIT1002_01938	0.45	+0.2
2,152,051	+		MIT1002_01938	0.50	+0.5
2,152,073	-		MIT1002_01938	0.52	-1.4
2,152,097	+		MIT1002_01938	0.55	-1.1
2,152,119	+		MIT1002_01938	0.57	-1.0
2,152,121	+		MIT1002_01938	0.58	-1.4
2,152,180	-		MIT1002_01938	0.64	-0.6
2,152,220	+		MIT1002_01938	0.69	+0.8
2,152,368	-		MIT1002_01938	0.86	+0.3
2,152,418	+				-1.0
2,152,510	-				+0.6
2,152,526	-				+0.4
2,152,540	+				-0.2
2,152,540	+				+0.4
2,152,540	+				+1.1
2,152,540	+				+0.5
2,152,540	+				-0.5
2,152,540	+				+0.0
2,152,548	-				+0.6
2,152,548	-				+1.0
2,152,586	+				-0.3
2,152,588	+				-0.2
2,152,588	+				-0.5
2,152,596	-				-1.8
2,152,596	-				-0.8
2,152,596	-				+0.2
2,152,596	-				+1.0
2,152,690	+		MIT1002_01939	0.17	-2.8
2,152,780	+		MIT1002_01939	0.35	+1.2
2,152,781	-		MIT1002_01939	0.36	+0.7
2,152,781	-		MIT1002_01939	0.36	-0.5
2,152,889	-		MIT1002_01939	0.57	+0.3
2,152,913	-		MIT1002_01939	0.62	+0.5
2,152,937	+		MIT1002_01939	0.66	+0.7
2,152,959	-		MIT1002_01939	0.71	-0.2
2,152,966	+		MIT1002_01939	0.72	+0.3
2,152,966	+		MIT1002_01939	0.72	+1.0
2,152,966	+		MIT1002_01939	0.72	+1.4
2,152,966	+		MIT1002_01939	0.72	-0.3
2,152,974	-		MIT1002_01939	0.74	-0.0
2,153,026	+		MIT1002_01939	0.84	+1.0
2,153,031	+		MIT1002_01939	0.85	+0.6
2,153,034	-		MIT1002_01939	0.86	+0.0
2,153,114	+				-0.8
2,153,122	-				+0.1
2,153,135	+				-0.8
2,153,135	+				+1.5
2,153,143	-				-0.6
2,153,145	+				+1.5
2,153,153	-				+0.6
2,153,202	-				+0.3
2,153,234	+				-0.3
2,153,367	+				+0.6
2,153,483	+		MIT1002_01940	0.13	+1.7