Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01790

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
1,990,629	+				+0.6
1,990,947	+		MIT1002_01789	0.27	+0.6
1,990,955	-		MIT1002_01789	0.29	-1.3
1,990,963	+		MIT1002_01789	0.30	+0.0
1,991,016	+		MIT1002_01789	0.39	-0.0
1,991,016	+		MIT1002_01789	0.39	+0.5
1,991,024	-		MIT1002_01789	0.41	+1.0
1,991,024	-		MIT1002_01789	0.41	-0.2
1,991,093	-		MIT1002_01789	0.53	+2.4
1,991,194	+		MIT1002_01789	0.70	+0.9
1,991,460	+				+0.8
1,991,468	-				-0.6
1,991,482	-				+0.7
1,991,510	+				-1.3
1,991,563	-				-0.3
1,991,578	+				+0.3
1,991,657	+				+0.6
1,991,657	+				+0.3
1,991,657	+				-0.8
1,991,657	+				+0.6
1,991,660	-				-0.1
1,991,665	-				+0.7
1,991,848	+		MIT1002_01790	0.26	-0.2
1,991,856	-		MIT1002_01790	0.26	-1.2
1,991,856	-		MIT1002_01790	0.26	-0.5
1,991,910	+		MIT1002_01790	0.31	-0.7
1,991,941	+		MIT1002_01790	0.34	-0.2
1,991,949	-		MIT1002_01790	0.35	-0.2
1,991,949	-		MIT1002_01790	0.35	-0.4
1,991,949	-		MIT1002_01790	0.35	+0.2
1,991,949	-		MIT1002_01790	0.35	-1.2
1,992,014	-		MIT1002_01790	0.41	+0.4
1,992,071	+		MIT1002_01790	0.46	-0.1
1,992,116	+		MIT1002_01790	0.51	+1.1
1,992,132	+		MIT1002_01790	0.52	-0.0
1,992,132	+		MIT1002_01790	0.52	+2.6
1,992,132	+		MIT1002_01790	0.52	+0.9
1,992,132	+		MIT1002_01790	0.52	+0.0
1,992,140	-		MIT1002_01790	0.53	-0.5
1,992,155	-		MIT1002_01790	0.54	+1.2
1,992,170	+		MIT1002_01790	0.56	+0.2
1,992,282	+		MIT1002_01790	0.66	-1.3
1,992,290	-		MIT1002_01790	0.67	-1.7
1,992,290	-		MIT1002_01790	0.67	-1.0
1,992,302	-		MIT1002_01790	0.68	-1.4
1,992,443	-		MIT1002_01790	0.81	+0.2
1,992,567	+				+0.1
1,992,581	+				+1.1
1,992,598	-				+0.3
1,992,609	-				-0.3
1,992,616	+				-0.4
1,992,624	-				+0.4
1,992,624	-				+0.6
1,992,624	-				-0.1
1,992,732	+				+0.5
1,992,813	+				-0.6
1,992,967	+				+1.1
1,992,972	+				-0.3
1,992,988	+				+0.3
1,992,993	-				-0.5
1,992,996	-				-1.0
1,993,108	+		MIT1002_01791	0.13	+0.0
1,993,130	+		MIT1002_01791	0.14	-1.7
1,993,218	+		MIT1002_01791	0.19	-0.0
1,993,268	+		MIT1002_01791	0.22	-0.1
1,993,382	-		MIT1002_01791	0.29	+0.0
1,993,417	+		MIT1002_01791	0.31	-0.1
1,993,460	-		MIT1002_01791	0.34	-0.7
1,993,480	-		MIT1002_01791	0.35	-0.7
1,993,487	-		MIT1002_01791	0.35	-0.8
1,993,533	-		MIT1002_01791	0.38	-0.1
1,993,555	-		MIT1002_01791	0.40	+0.8
1,993,584	+		MIT1002_01791	0.41	+0.4
1,993,627	+		MIT1002_01791	0.44	+1.2