Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01740

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
1,931,228	+				-0.7
1,932,229	-				+1.8
1,932,233	+				+1.5
1,932,241	-				+0.7
1,932,241	-				-0.1
1,932,278	+		MIT1002_01740	0.11	-1.6
1,932,278	+		MIT1002_01740	0.11	-1.3
1,932,280	+		MIT1002_01740	0.11	-0.2
1,932,286	-		MIT1002_01740	0.12	+0.7
1,932,286	-		MIT1002_01740	0.12	+0.9
1,932,288	-		MIT1002_01740	0.13	-1.4
1,932,310	-		MIT1002_01740	0.15	-1.1
1,932,316	-		MIT1002_01740	0.16	+0.0
1,932,324	-		MIT1002_01740	0.17	+0.5
1,932,338	+		MIT1002_01740	0.19	+0.2
1,932,368	+		MIT1002_01740	0.23	+0.9
1,932,374	-		MIT1002_01740	0.23	+1.0
1,932,376	+		MIT1002_01740	0.24	+0.4
1,932,494	+		MIT1002_01740	0.39	-1.4
1,932,502	-		MIT1002_01740	0.40	-0.3
1,932,536	-		MIT1002_01740	0.44	-0.4
1,932,576	+		MIT1002_01740	0.49	+0.2
1,932,589	-		MIT1002_01740	0.51	-0.3
1,932,612	+		MIT1002_01740	0.54	+0.1
1,932,627	+		MIT1002_01740	0.56	-0.4
1,932,635	-		MIT1002_01740	0.57	-2.1
1,932,635	-		MIT1002_01740	0.57	+1.5
1,932,635	-		MIT1002_01740	0.57	+1.3
1,932,635	-		MIT1002_01740	0.57	-1.0
1,932,647	+		MIT1002_01740	0.58	-0.6
1,932,655	-		MIT1002_01740	0.59	-1.1
1,932,736	+		MIT1002_01740	0.70	+0.3
1,932,812	-		MIT1002_01740	0.79	-0.9
1,932,843	+		MIT1002_01740	0.83	+0.3
1,932,879	+		MIT1002_01740	0.88	-1.2
1,932,879	+		MIT1002_01740	0.88	-1.9
1,932,879	+		MIT1002_01740	0.88	-0.2
1,932,879	+		MIT1002_01740	0.88	-1.3
1,932,887	-		MIT1002_01740	0.89	-0.0
1,932,887	-		MIT1002_01740	0.89	+0.4
1,932,965	-				-1.7
1,932,965	-				-0.7
1,933,013	-				-0.5
1,933,040	+				+0.7
1,933,059	-				-0.6
1,933,098	+		MIT1002_01741	0.16	+0.1
1,933,190	+		MIT1002_01741	0.32	+0.9
1,933,198	-		MIT1002_01741	0.34	-1.6
1,933,379	+		MIT1002_01741	0.66	+0.7
1,933,470	-		MIT1002_01741	0.83	-1.9
1,933,541	+				+1.2
1,933,549	-				+0.2
1,933,551	+				+0.3
1,933,559	-				-1.7
1,933,574	+				+0.9
1,933,582	-				-0.3
1,933,582	-				+0.3
1,933,605	+				-0.2
1,933,615	+				-1.6
1,933,627	-				-0.2
1,933,629	+				+0.4
1,933,631	+				-1.1
1,933,639	-				+1.1
1,933,639	-				+0.3
1,933,639	-				+2.1
1,933,693	-				+0.8
1,933,802	+				+0.3
1,933,805	-				+0.3
1,933,908	+		MIT1002_01742	0.25	-0.3
1,933,939	+		MIT1002_01742	0.30	-0.1
1,933,947	-		MIT1002_01742	0.31	-1.0
1,933,954	-		MIT1002_01742	0.32	-0.1