Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01616

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
1,779,114	+		MIT1002_01614	0.41	-0.7
1,779,205	-		MIT1002_01614	0.53	-0.5
1,779,228	+		MIT1002_01614	0.56	+1.0
1,779,228	+		MIT1002_01614	0.56	-0.7
1,779,228	+		MIT1002_01614	0.56	+1.1
1,779,229	+		MIT1002_01614	0.56	-1.0
1,779,258	+		MIT1002_01614	0.60	-1.4
1,779,303	-		MIT1002_01614	0.66	-0.0
1,779,315	-		MIT1002_01614	0.67	-1.7
1,779,316	+		MIT1002_01614	0.68	-0.0
1,779,356	+		MIT1002_01614	0.73	+0.5
1,779,375	+		MIT1002_01614	0.75	-1.0
1,779,496	+				+0.1
1,779,511	-				-1.4
1,779,523	-				+1.7
1,779,601	+				-0.7
1,779,605	-				+1.0
1,779,629	+		MIT1002_01615	0.13	+0.4
1,779,637	-		MIT1002_01615	0.15	+0.7
1,779,637	-		MIT1002_01615	0.15	+0.7
1,779,646	+		MIT1002_01615	0.17	+0.4
1,779,665	+		MIT1002_01615	0.22	-0.3
1,779,777	-		MIT1002_01615	0.49	-0.3
1,779,809	+		MIT1002_01615	0.57	+0.1
1,779,809	+		MIT1002_01615	0.57	+0.1
1,779,809	-		MIT1002_01615	0.57	+0.1
1,779,817	-		MIT1002_01615	0.59	+0.2
1,779,817	-		MIT1002_01615	0.59	-0.1
1,779,817	-		MIT1002_01615	0.59	-0.1
1,779,817	-		MIT1002_01615	0.59	+0.2
1,779,817	-		MIT1002_01615	0.59	-0.0
1,779,844	+		MIT1002_01615	0.65	+0.7
1,779,861	-		MIT1002_01615	0.69	+0.9
1,779,934	-		MIT1002_01615	0.87	+0.3
1,780,105	+				-0.2
1,780,149	-				+0.5
1,780,151	+				-0.7
1,780,159	-				+1.3
1,780,159	-				+0.7
1,780,159	-				-0.3
1,780,159	-				+0.6
1,780,159	-				-1.2
1,780,202	+		MIT1002_01616	0.11	-0.2
1,780,202	+		MIT1002_01616	0.11	-0.3
1,780,228	-		MIT1002_01616	0.13	-2.4
1,780,327	+		MIT1002_01616	0.20	-0.6
1,780,343	+		MIT1002_01616	0.21	+0.7
1,780,371	+		MIT1002_01616	0.23	-0.2
1,780,403	+		MIT1002_01616	0.25	+0.1
1,780,405	+		MIT1002_01616	0.26	-2.0
1,780,413	-		MIT1002_01616	0.26	-0.0
1,780,423	-		MIT1002_01616	0.27	+0.8
1,780,429	+		MIT1002_01616	0.27	-0.4
1,780,490	+		MIT1002_01616	0.32	+0.2
1,780,493	+		MIT1002_01616	0.32	+0.3
1,780,596	-		MIT1002_01616	0.39	+0.5
1,780,605	-		MIT1002_01616	0.40	-1.1
1,780,644	+		MIT1002_01616	0.43	-0.6
1,780,672	-		MIT1002_01616	0.45	-0.0
1,780,770	+		MIT1002_01616	0.52	-0.4
1,780,823	-		MIT1002_01616	0.55	-0.1
1,780,877	+		MIT1002_01616	0.59	-1.0
1,780,877	+		MIT1002_01616	0.59	+0.1
1,780,903	+		MIT1002_01616	0.61	+0.1
1,780,905	-		MIT1002_01616	0.61	-1.0
1,780,907	+		MIT1002_01616	0.61	-0.2
1,780,909	+		MIT1002_01616	0.62	+0.1
1,780,909	+		MIT1002_01616	0.62	+0.1
1,780,912	-		MIT1002_01616	0.62	-2.2
1,780,937	+		MIT1002_01616	0.64	-0.8
1,780,975	+		MIT1002_01616	0.66	-2.3
1,780,975	+		MIT1002_01616	0.66	-1.9
1,780,975	+		MIT1002_01616	0.66	-0.4
1,780,975	+		MIT1002_01616	0.66	-1.0
1,780,983	-		MIT1002_01616	0.67	-0.3
1,780,983	-		MIT1002_01616	0.67	-0.1
1,780,983	-		MIT1002_01616	0.67	+0.3
1,780,990	-		MIT1002_01616	0.67	+1.3
1,781,014	+		MIT1002_01616	0.69	+0.7
1,781,014	+		MIT1002_01616	0.69	-1.3
1,781,022	-		MIT1002_01616	0.70	+0.9
1,781,070	-		MIT1002_01616	0.73	-1.0
1,781,072	+		MIT1002_01616	0.73	-0.4
1,781,072	+		MIT1002_01616	0.73	+0.7
1,781,072	+		MIT1002_01616	0.73	+1.1
1,781,150	-		MIT1002_01616	0.79	-0.0
1,781,161	+		MIT1002_01616	0.80	-0.7
1,781,185	+		MIT1002_01616	0.81	+0.5
1,781,192	+		MIT1002_01616	0.82	-0.1
1,781,192	+		MIT1002_01616	0.82	-0.6
1,781,193	-		MIT1002_01616	0.82	-0.9
1,781,200	-		MIT1002_01616	0.82	+0.7
1,781,200	-		MIT1002_01616	0.82	-0.6
1,781,382	+				-0.0
1,781,382	+				-2.0
1,781,390	-				-0.7
1,781,538	+				+0.2
1,781,595	+		MIT1002_01617	0.18	+0.8
1,781,603	-		MIT1002_01617	0.19	+0.7
1,781,603	-		MIT1002_01617	0.19	-0.7
1,781,603	-		MIT1002_01617	0.19	-1.0
1,781,619	-		MIT1002_01617	0.22	+0.0
1,781,638	-		MIT1002_01617	0.25	+0.9
1,781,640	+		MIT1002_01617	0.26	+0.1
1,781,718	-		MIT1002_01617	0.39	+0.1
1,781,757	+		MIT1002_01617	0.46	+0.1
1,781,765	-		MIT1002_01617	0.48	-0.9
1,781,872	+		MIT1002_01617	0.66	-0.0
1,781,910	-		MIT1002_01617	0.73	-0.4
1,781,925	-		MIT1002_01617	0.76	-0.7
1,781,952	+		MIT1002_01617	0.80	-2.5
1,782,027	-				+0.3
1,782,065	+				+0.3
1,782,072	-				+0.4
1,782,154	-				+0.6
1,782,196	+				+0.5
1,782,197	+				+0.2
1,782,204	-				+0.8
1,782,221	-				+0.1
1,782,245	+				+0.7
1,782,329	-				+1.5
1,782,420	-		MIT1002_01618	0.12	+1.3