Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01457

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01455 and MIT1002_01456 are separated by 212 nucleotidesMIT1002_01456 and MIT1002_01457 are separated by 119 nucleotidesMIT1002_01457 and MIT1002_01458 are separated by 200 nucleotides MIT1002_01455: MIT1002_01455 - Sel1 repeat, at 1,606,324 to 1,607,229 _01455 MIT1002_01456: MIT1002_01456 - HSP-70 cofactor, at 1,607,442 to 1,608,065 _01456 MIT1002_01457: MIT1002_01457 - Heat shock protein 70, at 1,608,185 to 1,610,113 _01457 MIT1002_01458: MIT1002_01458 - Heat shock protein J, at 1,610,314 to 1,611,444 _01458 Position (kb) 1608 1609 1610 1611Strain fitness (log2 ratio) -2 -1 0 1at 1607.261 kb on - strandat 1607.281 kb on - strandat 1607.341 kb on - strandat 1607.433 kb on + strandat 1608.046 kb on + strandat 1609.695 kb on + strand, within MIT1002_01457at 1609.695 kb on + strand, within MIT1002_01457at 1610.025 kb on + strandat 1610.229 kb on + strandat 1610.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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1,607,261 - +0.6
1,607,281 - -0.8
1,607,341 - -0.7
1,607,433 + -0.1
1,608,046 + -2.2
1,609,695 + MIT1002_01457 0.78 -1.5
1,609,695 + MIT1002_01457 0.78 -1.6
1,610,025 + -0.3
1,610,229 + +1.0
1,610,252 + -1.4

Or see this region's nucleotide sequence